Hb_001699_080

Information

Type -
Description -
Location Contig1699: 65193-66910
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11430g
description hypothetical protein
nr
ID CDP01872.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q42564
description L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1
trembl
ID A0A068U0M1
description Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00037047001 PE=3 SV=1
Gene Ontology
ID GO:0016688
description l-ascorbate peroxidase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15791: 65079-66947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_080 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000103_130 0.083249835 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
3 Hb_001512_130 0.0882929878 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
4 Hb_015807_130 0.0922924106 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
5 Hb_000270_380 0.0972736276 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
6 Hb_002081_020 0.0980434668 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
7 Hb_005656_120 0.1014708851 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
8 Hb_020375_010 0.1048036659 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
9 Hb_005295_020 0.1060105028 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
10 Hb_001289_070 0.1074329696 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_003032_030 0.108443556 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
12 Hb_002062_010 0.1092496006 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
13 Hb_009023_010 0.1107961056 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
14 Hb_000364_090 0.1109699437 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
15 Hb_000083_210 0.1115257865 - - Major facilitator superfamily protein, putative [Theobroma cacao]
16 Hb_163950_050 0.1116333662 - - protein binding protein, putative [Ricinus communis]
17 Hb_001951_080 0.1124197652 - - O-acetyltransferase, putative [Ricinus communis]
18 Hb_000031_180 0.1126407963 - - sarcosine oxidase, putative [Ricinus communis]
19 Hb_015561_010 0.1128816293 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000017_180 0.1132301532 - - hypothetical protein JCGZ_20551 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_080 Hb_001699_080 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_002613_040 Hb_002613_040 Hb_000103_130--Hb_002613_040 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_001210_060 Hb_001210_060 Hb_000103_130--Hb_001210_060 Hb_163950_050 Hb_163950_050 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190 Hb_015561_010 Hb_015561_010 Hb_001512_130--Hb_015561_010 Hb_002062_010 Hb_002062_010 Hb_001512_130--Hb_002062_010 Hb_000017_180 Hb_000017_180 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_001512_130--Hb_005656_120 Hb_009023_010 Hb_009023_010 Hb_001512_130--Hb_009023_010 Hb_001289_070 Hb_001289_070 Hb_015807_130--Hb_001289_070 Hb_003152_020 Hb_003152_020 Hb_015807_130--Hb_003152_020 Hb_002151_070 Hb_002151_070 Hb_015807_130--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_015807_130--Hb_001140_290 Hb_001688_050 Hb_001688_050 Hb_015807_130--Hb_001688_050 Hb_015807_130--Hb_002081_020 Hb_000270_380--Hb_009023_010 Hb_012098_160 Hb_012098_160 Hb_000270_380--Hb_012098_160 Hb_001486_280 Hb_001486_280 Hb_000270_380--Hb_001486_280 Hb_000270_380--Hb_015561_010 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_008461_060 Hb_008461_060 Hb_002081_020--Hb_008461_060 Hb_002081_020--Hb_001289_070 Hb_001001_070 Hb_001001_070 Hb_002081_020--Hb_001001_070 Hb_002081_020--Hb_001688_050 Hb_005656_120--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_005656_120--Hb_003417_050 Hb_128986_010 Hb_128986_010 Hb_005656_120--Hb_128986_010 Hb_005656_120--Hb_000017_180 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108654 1.51252 5.00827 14.4177 0.134557 0.247862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124828 0.196319 0.0892442 0.396533 11.7908

CAGE analysis