Hb_001699_130

Information

Type transcription factor
Description TF Family: CSD
Location Contig1699: 101984-102721
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11495g
description cold-shock DNA-binding family protein
nr
ID XP_012065977.1
description PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
swissprot
ID O65639
description Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1
trembl
ID A0A067LQE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06552 PE=4 SV=1
Gene Ontology
ID GO:0003690
description cold shock domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15797: 102486-102667 , PASA_asmbl_15798: 103404-106205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_130 0.0 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
2 Hb_000617_150 0.0616531607 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
3 Hb_000696_040 0.0666787204 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000120_680 0.0746610727 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
5 Hb_000723_080 0.082399907 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_010608_050 0.0824018945 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
7 Hb_016901_010 0.0833311191 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
8 Hb_021596_040 0.0846304483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000367_060 0.085755374 - - diacylglycerol kinase, theta, putative [Ricinus communis]
10 Hb_004993_050 0.0868245751 - - -
11 Hb_001454_190 0.0876909509 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
12 Hb_172932_010 0.0907321764 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_011214_020 0.0919548029 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
14 Hb_000732_130 0.0938336608 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
15 Hb_001959_190 0.093856912 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
16 Hb_008695_100 0.095216896 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
17 Hb_000482_010 0.0960765926 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
18 Hb_000062_220 0.0968284289 - - BnaC02g35870D [Brassica napus]
19 Hb_004607_030 0.0974948862 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
20 Hb_008623_020 0.0984380157 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_130 Hb_001699_130 Hb_000617_150 Hb_000617_150 Hb_001699_130--Hb_000617_150 Hb_000696_040 Hb_000696_040 Hb_001699_130--Hb_000696_040 Hb_000120_680 Hb_000120_680 Hb_001699_130--Hb_000120_680 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_016901_010 Hb_016901_010 Hb_001699_130--Hb_016901_010 Hb_000617_150--Hb_000120_680 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_000696_040--Hb_016901_010 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_000240_090 Hb_000240_090 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_000723_080--Hb_016901_010 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_010608_050--Hb_008695_100 Hb_010608_050--Hb_004607_030 Hb_011030_020 Hb_011030_020 Hb_010608_050--Hb_011030_020 Hb_010608_050--Hb_000617_150 Hb_010608_050--Hb_011534_030 Hb_016901_010--Hb_001454_190 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7958 19.4302 5.77169 14.1627 24.9509 20.83
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.701 45.2139 51.8452 19.8748 15.416

CAGE analysis