Hb_001699_140

Information

Type -
Description -
Location Contig1699: 103398-106091
Sequence    

Annotation

kegg
ID gmx:100802032
description ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like
nr
ID XP_012065965.1
description PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
swissprot
ID P10933
description Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Pisum sativum GN=PETH PE=1 SV=1
trembl
ID A0A067LHF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06551 PE=4 SV=1
Gene Ontology
ID GO:0009534
description ferredoxin--nadp leaf chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15798: 103404-106205
cDNA
(Sanger)
(ID:Location)		 010_G18.ab1: 104563-106061 , 031_C13.ab1: 104617-106136 , 039_A24.ab1: 104467-106069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_140 0.0 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
2 Hb_000101_330 0.0602339561 - - -
3 Hb_007477_060 0.0603799276 - - unknown [Medicago truncatula]
4 Hb_005305_070 0.064262136 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
5 Hb_000270_090 0.0684011483 - - nitrate transporter, putative [Ricinus communis]
6 Hb_005054_120 0.0694792155 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
7 Hb_000460_040 0.069619307 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
8 Hb_003536_020 0.0708691053 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_002852_010 0.0736477206 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_025557_060 0.0764676945 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
11 Hb_000116_090 0.0776141889 - - catalase [Hevea brasiliensis]
12 Hb_005063_030 0.0782125686 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_002007_220 0.0832263136 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_000077_380 0.0834172428 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
15 Hb_001321_010 0.0835887015 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
16 Hb_003494_090 0.0836568629 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_006570_030 0.0884132044 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
18 Hb_001975_100 0.0897686535 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
19 Hb_002871_180 0.090598308 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
20 Hb_080922_010 0.0908883573 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001699_140 Hb_001699_140 Hb_000101_330 Hb_000101_330 Hb_001699_140--Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_001699_140--Hb_007477_060 Hb_005305_070 Hb_005305_070 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_000101_330--Hb_007477_060 Hb_006570_030 Hb_006570_030 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_002871_180 Hb_002871_180 Hb_007477_060--Hb_002871_180 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_001321_010 Hb_001321_010 Hb_000270_090--Hb_001321_010 Hb_004994_030 Hb_004994_030 Hb_000270_090--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_000270_090--Hb_011104_020 Hb_002007_220 Hb_002007_220 Hb_000270_090--Hb_002007_220 Hb_002407_090 Hb_002407_090 Hb_000270_090--Hb_002407_090 Hb_002852_010 Hb_002852_010 Hb_005054_120--Hb_002852_010 Hb_001007_070 Hb_001007_070 Hb_005054_120--Hb_001007_070 Hb_005054_120--Hb_005063_030 Hb_001564_120 Hb_001564_120 Hb_005054_120--Hb_001564_120 Hb_002259_090 Hb_002259_090 Hb_005054_120--Hb_002259_090 Hb_001999_230 Hb_001999_230 Hb_005054_120--Hb_001999_230 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_005329_010 Hb_005329_010 Hb_000460_040--Hb_005329_010 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_005211_080 Hb_005211_080 Hb_000460_040--Hb_005211_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135307 95.0292 407.948 182.014 0.134504 0.179439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.682525 0.434674 0.0479741 18.3392 729.565

CAGE analysis