Hb_001699_210

Information

Type -
Description -
Location Contig1699: 223818-228358
Sequence    

Annotation

kegg
ID rcu:RCOM_0870510
description ap endonuclease, putative (EC:4.2.99.18)
nr
ID XP_012065930.1
description PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
swissprot
ID F4JNY0
description DNA-(apurinic or apyrimidinic site) lyase 2 OS=Arabidopsis thaliana GN=APE2 PE=1 SV=1
trembl
ID A0A067LPG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06543 PE=4 SV=1
Gene Ontology
ID GO:0005622
description dna-(apurinic or apyrimidinic site) lyase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15802: 223867-226243 , PASA_asmbl_15803: 226818-228077 , PASA_asmbl_15804: 226818-228004 , PASA_asmbl_15806: 228116-228660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_210 0.0 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
2 Hb_001675_300 0.0595652716 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
3 Hb_065755_030 0.0952834444 - - -
4 Hb_000392_230 0.0958475472 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006615_050 0.0963502303 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
6 Hb_007007_040 0.0964394794 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_001864_070 0.0978157317 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
8 Hb_012340_090 0.0984305637 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
9 Hb_001186_090 0.0990771947 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
10 Hb_011618_050 0.1000185304 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
11 Hb_000751_030 0.1002213594 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
12 Hb_010315_060 0.1030501965 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_003579_050 0.1042593777 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
14 Hb_001776_060 0.1047304378 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
15 Hb_000260_680 0.108095793 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
16 Hb_000789_320 0.108340042 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
17 Hb_008642_040 0.1087719758 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_077026_010 0.1089117181 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
19 Hb_004122_040 0.1093046256 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_000107_030 0.109373929 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001699_210 Hb_001699_210 Hb_001675_300 Hb_001675_300 Hb_001699_210--Hb_001675_300 Hb_065755_030 Hb_065755_030 Hb_001699_210--Hb_065755_030 Hb_000392_230 Hb_000392_230 Hb_001699_210--Hb_000392_230 Hb_006615_050 Hb_006615_050 Hb_001699_210--Hb_006615_050 Hb_007007_040 Hb_007007_040 Hb_001699_210--Hb_007007_040 Hb_001864_070 Hb_001864_070 Hb_001699_210--Hb_001864_070 Hb_002874_180 Hb_002874_180 Hb_001675_300--Hb_002874_180 Hb_000058_130 Hb_000058_130 Hb_001675_300--Hb_000058_130 Hb_000373_050 Hb_000373_050 Hb_001675_300--Hb_000373_050 Hb_001675_300--Hb_007007_040 Hb_000003_170 Hb_000003_170 Hb_001675_300--Hb_000003_170 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_010315_060 Hb_010315_060 Hb_000392_230--Hb_010315_060 Hb_000649_230 Hb_000649_230 Hb_000392_230--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_000392_230--Hb_000751_030 Hb_022132_050 Hb_022132_050 Hb_000392_230--Hb_022132_050 Hb_001195_260 Hb_001195_260 Hb_000392_230--Hb_001195_260 Hb_073973_130 Hb_073973_130 Hb_000392_230--Hb_073973_130 Hb_004807_020 Hb_004807_020 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_007007_040--Hb_000751_030 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_001898_240 Hb_001898_240 Hb_001864_070--Hb_001898_240 Hb_002217_110 Hb_002217_110 Hb_001864_070--Hb_002217_110 Hb_002553_040 Hb_002553_040 Hb_001864_070--Hb_002553_040 Hb_008225_090 Hb_008225_090 Hb_001864_070--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001864_070--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23935 3.75885 11.7698 5.67084 7.3138 5.65653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84988 7.79932 2.2563 2.99078 5.24754

CAGE analysis