Hb_001699_230

Information

Type -
Description -
Location Contig1699: 234609-240706
Sequence    

Annotation

kegg
ID rcu:RCOM_0870530
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012065919.1
description PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
swissprot
ID Q9FKW4
description Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1
trembl
ID A0A067LHE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06541 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 28-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15809: 234590-240362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_230 0.0 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
2 Hb_004128_030 0.0988951026 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
3 Hb_010661_010 0.1057820889 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
4 Hb_000152_330 0.1158839417 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
5 Hb_002217_090 0.1161568333 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
6 Hb_003747_210 0.1183381152 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
7 Hb_001376_010 0.1253433671 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_001500_030 0.1307180167 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
9 Hb_000711_010 0.1324527298 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
10 Hb_007839_020 0.1357662695 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002915_060 0.1359570111 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
12 Hb_007576_200 0.1368628893 - - amino acid transporter, putative [Ricinus communis]
13 Hb_010407_080 0.1390877083 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
14 Hb_000704_030 0.1410743197 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
15 Hb_000110_300 0.141538229 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
16 Hb_000802_090 0.1441827104 - - ornithine aminotransferase, putative [Ricinus communis]
17 Hb_000012_240 0.145100967 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
18 Hb_002876_250 0.1453127414 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
19 Hb_001944_020 0.1457482374 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
20 Hb_012107_010 0.1464188069 - - hypothetical protein JCGZ_19531 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_230 Hb_001699_230 Hb_004128_030 Hb_004128_030 Hb_001699_230--Hb_004128_030 Hb_010661_010 Hb_010661_010 Hb_001699_230--Hb_010661_010 Hb_000152_330 Hb_000152_330 Hb_001699_230--Hb_000152_330 Hb_002217_090 Hb_002217_090 Hb_001699_230--Hb_002217_090 Hb_003747_210 Hb_003747_210 Hb_001699_230--Hb_003747_210 Hb_001376_010 Hb_001376_010 Hb_001699_230--Hb_001376_010 Hb_004128_030--Hb_002217_090 Hb_004128_030--Hb_010661_010 Hb_002686_230 Hb_002686_230 Hb_004128_030--Hb_002686_230 Hb_001500_030 Hb_001500_030 Hb_004128_030--Hb_001500_030 Hb_010407_080 Hb_010407_080 Hb_004128_030--Hb_010407_080 Hb_004128_030--Hb_003747_210 Hb_010661_010--Hb_001500_030 Hb_127311_010 Hb_127311_010 Hb_010661_010--Hb_127311_010 Hb_000252_210 Hb_000252_210 Hb_010661_010--Hb_000252_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000656_390 Hb_000656_390 Hb_000152_330--Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000152_330--Hb_000951_130 Hb_001411_140 Hb_001411_140 Hb_000152_330--Hb_001411_140 Hb_000173_470 Hb_000173_470 Hb_000152_330--Hb_000173_470 Hb_001723_100 Hb_001723_100 Hb_000152_330--Hb_001723_100 Hb_002217_090--Hb_001500_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12232 37.5086 15.0286 22.485 4.14128 4.45959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8622 6.90252 10.662 13.4095 11.7025

CAGE analysis