Hb_001699_240

Information

Type -
Description -
Location Contig1699: 266562-268761
Sequence    

Annotation

kegg
ID vvi:100233079
description F3H, FHT; flavanone 3-hydroxylase (EC:1.14.11.9)
nr
ID XP_012065916.1
description PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
swissprot
ID P41090
description Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1
trembl
ID A0A067LEF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06540 PE=3 SV=1
Gene Ontology
ID GO:0031418
description -oxoglutarate 3-dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15811: 266443-268835
cDNA
(Sanger)
(ID:Location)		 007_D19.ab1: 267177-268837 , 007_E14.ab1: 267212-268837 , 017_A13.ab1: 267346-268835

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_240 0.0 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
2 Hb_002818_080 0.0584150337 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
3 Hb_002805_230 0.070275011 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
4 Hb_005614_040 0.0713814206 - - unnamed protein product [Coffea canephora]
5 Hb_000503_040 0.0748973877 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
6 Hb_007483_040 0.0778297825 - - PREDICTED: protein SRG1-like [Jatropha curcas]
7 Hb_000712_070 0.079377052 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003090_070 0.0796051095 - - PREDICTED: laccase-7 [Jatropha curcas]
9 Hb_000059_100 0.0829883271 - - Basic blue protein, putative [Ricinus communis]
10 Hb_000141_070 0.08426043 - - l-lactate dehydrogenase, putative [Ricinus communis]
11 Hb_009568_010 0.0845034904 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
12 Hb_004693_010 0.0890070486 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
13 Hb_010697_030 0.092409483 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_003891_060 0.0926824655 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
15 Hb_007527_020 0.0958935372 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_001930_060 0.0973436397 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
17 Hb_000352_080 0.0974412871 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
18 Hb_007532_050 0.0984759317 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_001901_090 0.0987612843 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_058620_050 0.0996886083 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_001699_240 Hb_001699_240 Hb_002818_080 Hb_002818_080 Hb_001699_240--Hb_002818_080 Hb_002805_230 Hb_002805_230 Hb_001699_240--Hb_002805_230 Hb_005614_040 Hb_005614_040 Hb_001699_240--Hb_005614_040 Hb_000503_040 Hb_000503_040 Hb_001699_240--Hb_000503_040 Hb_007483_040 Hb_007483_040 Hb_001699_240--Hb_007483_040 Hb_000712_070 Hb_000712_070 Hb_001699_240--Hb_000712_070 Hb_009568_010 Hb_009568_010 Hb_002818_080--Hb_009568_010 Hb_000141_070 Hb_000141_070 Hb_002818_080--Hb_000141_070 Hb_001930_060 Hb_001930_060 Hb_002818_080--Hb_001930_060 Hb_001456_040 Hb_001456_040 Hb_002818_080--Hb_001456_040 Hb_002818_080--Hb_007483_040 Hb_003090_070 Hb_003090_070 Hb_002805_230--Hb_003090_070 Hb_002805_230--Hb_000712_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_007532_050 Hb_007532_050 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_004693_010 Hb_004693_010 Hb_002805_230--Hb_004693_010 Hb_005614_040--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_005614_040--Hb_000059_100 Hb_005614_040--Hb_000503_040 Hb_005614_040--Hb_009568_010 Hb_185391_010 Hb_185391_010 Hb_005614_040--Hb_185391_010 Hb_001901_090 Hb_001901_090 Hb_000503_040--Hb_001901_090 Hb_000503_040--Hb_007483_040 Hb_010697_030 Hb_010697_030 Hb_000503_040--Hb_010697_030 Hb_000503_040--Hb_000712_070 Hb_007483_040--Hb_010697_030 Hb_020480_050 Hb_020480_050 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_009568_010 Hb_007483_040--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_007483_040--Hb_003334_080 Hb_007483_040--Hb_000712_070 Hb_000712_070--Hb_003090_070 Hb_000712_070--Hb_000141_070 Hb_000712_070--Hb_003334_080 Hb_000712_070--Hb_004693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0544705 35.2278 54.9592 75.9493 0.0182043 0.0765356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19399 8.61397 2.30431 1826.32 2.09114

CAGE analysis