Hb_001700_020

Information

Type -
Description -
Location Contig1700: 14066-15433
Sequence    

Annotation

kegg
ID rcu:RCOM_0803120
description 60S ribosomal protein L37, putative
nr
ID XP_012077456.1
description PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
swissprot
ID Q8LFH7
description 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1
trembl
ID A0A067KR06
description Ribosomal protein L37 OS=Jatropha curcas GN=JCGZ_07790 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15902: 14065-15315
cDNA
(Sanger)
(ID:Location)		 004_D23.ab1: 14105-15257 , 034_M14.ab1: 14102-15259 , 035_A23.ab1: 14105-15256 , 039_C04.ab1: 14099-15315 , 042_B08.ab1: 14139-15258 , 045_J05.ab1: 14099-15315

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001700_020 0.0 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
2 Hb_026048_070 0.0985628136 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
3 Hb_001016_090 0.0999296335 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
4 Hb_000163_130 0.1023673037 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
5 Hb_000780_210 0.1047098725 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_000389_080 0.1059104863 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
7 Hb_012265_010 0.1075197857 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
8 Hb_008699_020 0.1075825199 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
9 Hb_000722_040 0.1091486034 - - -
10 Hb_001832_120 0.1097545785 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
11 Hb_000224_090 0.1109992694 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
12 Hb_000648_020 0.1110243096 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
13 Hb_183086_040 0.1111737151 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
14 Hb_002107_120 0.111804758 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
15 Hb_148930_010 0.1144660137 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
16 Hb_000085_330 0.1153921932 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
17 Hb_000364_030 0.1174453481 - - RNA binding protein, putative [Ricinus communis]
18 Hb_001538_100 0.1183124502 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
19 Hb_001623_430 0.1194815122 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
20 Hb_003097_210 0.1195474132 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001700_020 Hb_001700_020 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001016_090 Hb_001016_090 Hb_001700_020--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_001700_020--Hb_000163_130 Hb_000780_210 Hb_000780_210 Hb_001700_020--Hb_000780_210 Hb_000389_080 Hb_000389_080 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_032260_030 Hb_032260_030 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_001780_050 Hb_001780_050 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_000163_130--Hb_003053_030 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_000389_080--Hb_012539_020 Hb_000389_080--Hb_001780_050 Hb_000389_080--Hb_000163_130 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_000389_080--Hb_003053_030 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_012265_010--Hb_148930_010 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.6431 27.8511 19.7611 73.2351 55.8761 125.101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
343.716 385.094 181.164 185.426 38.7062

CAGE analysis