Hb_001700_030

Information

Type transcription factor
Description TF Family: ULT
Location Contig1700: 43806-48212
Sequence    

Annotation

kegg
ID rcu:RCOM_1176240
description Protein ULTRAPETALA1, putative
nr
ID XP_012088345.1
description PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
swissprot
ID Q8GZA8
description Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1
trembl
ID A0A067JJN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25838 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein ultrapetala 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15903: 43892-44021 , PASA_asmbl_15904: 47176-47693 , PASA_asmbl_15905: 44054-48354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001700_030 0.0 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
2 Hb_004705_100 0.0901222133 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
3 Hb_000692_220 0.0907961529 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
4 Hb_033594_150 0.0924341539 - - unknown [Lotus japonicus]
5 Hb_001105_070 0.0990292379 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
6 Hb_007926_060 0.1044825915 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
7 Hb_001205_150 0.105787185 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
8 Hb_012653_040 0.1060014864 - - UV-induced protein uvi31, putative [Ricinus communis]
9 Hb_010042_010 0.1078915211 - - Urease accessory protein ureD, putative [Ricinus communis]
10 Hb_000162_260 0.110211473 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
11 Hb_000479_190 0.1114781911 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001584_190 0.1121396413 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
13 Hb_010174_020 0.1123571905 - - protein binding protein, putative [Ricinus communis]
14 Hb_029388_030 0.1162698272 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
15 Hb_009773_020 0.1170783461 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
16 Hb_004374_140 0.1173381997 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
17 Hb_000987_070 0.1182086825 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
18 Hb_000985_060 0.1183936454 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
19 Hb_000898_050 0.1188466807 - - -
20 Hb_092337_010 0.1198096344 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_001700_030 Hb_001700_030 Hb_004705_100 Hb_004705_100 Hb_001700_030--Hb_004705_100 Hb_000692_220 Hb_000692_220 Hb_001700_030--Hb_000692_220 Hb_033594_150 Hb_033594_150 Hb_001700_030--Hb_033594_150 Hb_001105_070 Hb_001105_070 Hb_001700_030--Hb_001105_070 Hb_007926_060 Hb_007926_060 Hb_001700_030--Hb_007926_060 Hb_001205_150 Hb_001205_150 Hb_001700_030--Hb_001205_150 Hb_005686_060 Hb_005686_060 Hb_004705_100--Hb_005686_060 Hb_092337_010 Hb_092337_010 Hb_004705_100--Hb_092337_010 Hb_010172_080 Hb_010172_080 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_004705_100--Hb_000692_220 Hb_009773_020 Hb_009773_020 Hb_004705_100--Hb_009773_020 Hb_000692_220--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_000692_220--Hb_000479_190 Hb_010174_020 Hb_010174_020 Hb_000692_220--Hb_010174_020 Hb_000692_220--Hb_092337_010 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_152784_010 Hb_152784_010 Hb_033594_150--Hb_152784_010 Hb_000221_160 Hb_000221_160 Hb_033594_150--Hb_000221_160 Hb_000985_060 Hb_000985_060 Hb_033594_150--Hb_000985_060 Hb_029388_030 Hb_029388_030 Hb_033594_150--Hb_029388_030 Hb_010042_010 Hb_010042_010 Hb_033594_150--Hb_010042_010 Hb_018124_010 Hb_018124_010 Hb_033594_150--Hb_018124_010 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_007926_060--Hb_001105_070 Hb_001205_150--Hb_010174_020 Hb_001205_150--Hb_000479_190 Hb_006429_010 Hb_006429_010 Hb_001205_150--Hb_006429_010 Hb_003502_090 Hb_003502_090 Hb_001205_150--Hb_003502_090 Hb_000161_060 Hb_000161_060 Hb_001205_150--Hb_000161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9809 4.19779 4.53289 25.2395 12.1141 16.3131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8561 22.4428 26.0277 7.95511 4.883

CAGE analysis