Hb_001700_040

Information

Type -
Description -
Location Contig1700: 48941-58672
Sequence    

Annotation

kegg
ID rcu:RCOM_1176220
description hypothetical protein
nr
ID XP_012088344.1
description PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
swissprot
ID Q52KK4
description H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus GN=Naf1 PE=2 SV=1
trembl
ID A0A067JW23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15906: 49015-58519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001700_040 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
2 Hb_000457_260 0.066879151 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
3 Hb_000318_510 0.0715323225 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
4 Hb_000283_070 0.0736725922 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
5 Hb_000878_010 0.0738884775 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
6 Hb_005679_050 0.0750864766 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000101_240 0.0764130572 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
8 Hb_048476_180 0.0771416016 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
9 Hb_003362_070 0.0773976731 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_012656_030 0.0785756618 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
11 Hb_004724_060 0.0786184289 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
12 Hb_004602_040 0.0789530499 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
13 Hb_010417_050 0.0799328335 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
14 Hb_123352_020 0.0811033193 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
15 Hb_000922_370 0.0814981758 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
16 Hb_001322_210 0.0815603376 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
17 Hb_003216_080 0.0821450098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
18 Hb_000574_070 0.0830333226 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
19 Hb_001199_100 0.0839598372 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
20 Hb_005901_020 0.0840232042 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001700_040 Hb_001700_040 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_000318_510--Hb_000283_070 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_004724_060 Hb_004724_060 Hb_000878_010--Hb_004724_060 Hb_000313_060 Hb_000313_060 Hb_000878_010--Hb_000313_060 Hb_001322_210 Hb_001322_210 Hb_000878_010--Hb_001322_210 Hb_003938_080 Hb_003938_080 Hb_000878_010--Hb_003938_080 Hb_011318_010 Hb_011318_010 Hb_000878_010--Hb_011318_010 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_016898_010 Hb_016898_010 Hb_000101_240--Hb_016898_010 Hb_000101_240--Hb_003428_070 Hb_000084_120 Hb_000084_120 Hb_000101_240--Hb_000084_120 Hb_048476_180 Hb_048476_180 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7294 23.6774 8.23593 13.3505 22.7893 38.4314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8131 12.7898 26.3285 24.1489 17.6709

CAGE analysis