Hb_001703_030

Information

Type transcription factor
Description TF Family: SET
Location Contig1703: 102845-107054
Sequence    

Annotation

kegg
ID rcu:RCOM_0837760
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative (EC:2.1.1.127)
nr
ID XP_002522479.1
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9XI84
description [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1
trembl
ID B9S910
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast, putative OS=Ricinus communis GN=RCOM_0837760 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fructose-bisphosphate aldolase-lysine n- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15922: 104804-106565 , PASA_asmbl_15923: 102965-105040 , PASA_asmbl_15925: 106612-106941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_030 0.0 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
2 Hb_000046_280 0.0749447181 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
3 Hb_012799_180 0.0763158171 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
4 Hb_009838_080 0.0763362182 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_132835_010 0.0839664956 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
6 Hb_011867_010 0.084619971 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
7 Hb_017904_010 0.0857298283 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
8 Hb_002609_020 0.0877056749 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
9 Hb_012725_050 0.0910316782 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
10 Hb_000069_110 0.092291336 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
11 Hb_085781_010 0.094366764 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
12 Hb_002477_070 0.0952765223 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
13 Hb_000107_620 0.0969314741 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
14 Hb_008648_010 0.0975852564 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
15 Hb_001629_110 0.0987752356 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
16 Hb_004440_090 0.1001702884 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
17 Hb_004735_040 0.1015611346 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
18 Hb_004048_110 0.1037300877 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
19 Hb_000342_130 0.1041697391 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
20 Hb_002214_040 0.1044848855 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_001703_030 Hb_001703_030 Hb_000046_280 Hb_000046_280 Hb_001703_030--Hb_000046_280 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_009838_080 Hb_009838_080 Hb_001703_030--Hb_009838_080 Hb_132835_010 Hb_132835_010 Hb_001703_030--Hb_132835_010 Hb_011867_010 Hb_011867_010 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010 Hb_004440_090 Hb_004440_090 Hb_000046_280--Hb_004440_090 Hb_012725_050 Hb_012725_050 Hb_000046_280--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000046_280--Hb_002214_040 Hb_007576_040 Hb_007576_040 Hb_000046_280--Hb_007576_040 Hb_000392_440 Hb_000392_440 Hb_000046_280--Hb_000392_440 Hb_085781_010 Hb_085781_010 Hb_012799_180--Hb_085781_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_009838_080--Hb_002214_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_006031_020 Hb_006031_020 Hb_011867_010--Hb_006031_020 Hb_011867_010--Hb_000069_110 Hb_011867_010--Hb_002609_020 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_000479_010 Hb_000479_010 Hb_011867_010--Hb_000479_010 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_011571_010 Hb_011571_010 Hb_017904_010--Hb_011571_010 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4634 3.67208 8.75899 4.0618 19.8866 14.5413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6027 19.0188 17.6674 7.31646 10.5109

CAGE analysis