Hb_001703_040

Information

Type -
Description -
Location Contig1703: 108031-112183
Sequence    

Annotation

kegg
ID rcu:RCOM_0837770
description hypothetical protein
nr
ID XP_012067694.1
description PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067L227
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15645 PE=4 SV=1
Gene Ontology
ID GO:0005509
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15926: 107943-108955 , PASA_asmbl_15927: 107943-109987 , PASA_asmbl_15928: 110019-112150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_040 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
2 Hb_000788_030 0.0599595867 - - PREDICTED: dynamin-2A [Jatropha curcas]
3 Hb_012438_030 0.0609423665 - - PREDICTED: protein sym-1 [Jatropha curcas]
4 Hb_002631_240 0.0658144702 - - JHL17M24.3 [Jatropha curcas]
5 Hb_087313_010 0.0676749124 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001504_010 0.0713549329 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_000120_890 0.0747132675 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
8 Hb_000476_060 0.0747599085 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
9 Hb_000163_260 0.0758261767 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
10 Hb_003098_070 0.0771194981 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
11 Hb_004100_050 0.0772691784 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
12 Hb_002684_020 0.0774805641 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
13 Hb_000028_520 0.0784783171 - - hypothetical protein L484_025125 [Morus notabilis]
14 Hb_000537_100 0.0788031264 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_004324_360 0.078824663 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
16 Hb_000003_170 0.0793027045 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
17 Hb_000254_100 0.0793208978 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
18 Hb_005946_040 0.0797866394 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
19 Hb_000975_210 0.0800593426 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_000260_460 0.0803555889 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001703_040 Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_001703_040--Hb_000788_030 Hb_012438_030 Hb_012438_030 Hb_001703_040--Hb_012438_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_087313_010 Hb_087313_010 Hb_001703_040--Hb_087313_010 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_012438_030--Hb_087313_010 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_073973_090 Hb_073973_090 Hb_002631_240--Hb_073973_090 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_087313_010--Hb_002218_020 Hb_087313_010--Hb_102948_010 Hb_087313_010--Hb_004324_360 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_003498_100 Hb_003498_100 Hb_000120_890--Hb_003498_100 Hb_000120_890--Hb_000476_060 Hb_000120_890--Hb_001504_010 Hb_178968_060 Hb_178968_060 Hb_000120_890--Hb_178968_060 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58135 3.39174 8.27272 4.58956 2.76286 2.40773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95961 3.28327 2.9911 3.19761 5.63212

CAGE analysis