Hb_001703_110

Information

Type -
Description -
Location Contig1703: 160280-161468
Sequence    

Annotation

kegg
ID mdm:103405842
description putative ribonuclease H protein At1g65750
nr
ID XP_008343113.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID -
description -
trembl
ID S8BT41
description Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_110 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_007101_290 0.1756992155 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_000813_150 0.23301545 - - -
4 Hb_003960_020 0.2423113977 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_169492_020 0.252126848 - - hypothetical protein JCGZ_11849 [Jatropha curcas]
6 Hb_000772_060 0.2525903414 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002918_130 0.2577702336 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
8 Hb_002067_130 0.2623900628 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
9 Hb_001085_100 0.2676201034 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_001318_290 0.2788954448 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
11 Hb_008479_020 0.2885247602 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
12 Hb_001832_020 0.2994033191 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
13 Hb_009545_020 0.3032059875 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
14 Hb_009736_010 0.308694953 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009813_080 0.3120169747 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
16 Hb_006420_090 0.312377819 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
17 Hb_031527_060 0.3131147468 - - glutamate decarboxylase, putative [Ricinus communis]
18 Hb_002311_170 0.3132077433 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
19 Hb_015220_010 0.3191673594 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
20 Hb_011114_030 0.3197136281 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_001703_110 Hb_001703_110 Hb_007101_290 Hb_007101_290 Hb_001703_110--Hb_007101_290 Hb_000813_150 Hb_000813_150 Hb_001703_110--Hb_000813_150 Hb_003960_020 Hb_003960_020 Hb_001703_110--Hb_003960_020 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_002918_130 Hb_002918_130 Hb_001703_110--Hb_002918_130 Hb_006420_090 Hb_006420_090 Hb_007101_290--Hb_006420_090 Hb_007101_290--Hb_003960_020 Hb_000032_580 Hb_000032_580 Hb_007101_290--Hb_000032_580 Hb_007101_290--Hb_002918_130 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020 Hb_002067_130 Hb_002067_130 Hb_000813_150--Hb_002067_130 Hb_010883_220 Hb_010883_220 Hb_000813_150--Hb_010883_220 Hb_009252_120 Hb_009252_120 Hb_000813_150--Hb_009252_120 Hb_006198_140 Hb_006198_140 Hb_000813_150--Hb_006198_140 Hb_000359_320 Hb_000359_320 Hb_000813_150--Hb_000359_320 Hb_015220_010 Hb_015220_010 Hb_003960_020--Hb_015220_010 Hb_001729_040 Hb_001729_040 Hb_003960_020--Hb_001729_040 Hb_009813_080 Hb_009813_080 Hb_003960_020--Hb_009813_080 Hb_000892_020 Hb_000892_020 Hb_003960_020--Hb_000892_020 Hb_169492_020--Hb_002067_130 Hb_001318_290 Hb_001318_290 Hb_169492_020--Hb_001318_290 Hb_169492_020--Hb_000813_150 Hb_169492_020--Hb_002918_130 Hb_009545_020 Hb_009545_020 Hb_169492_020--Hb_009545_020 Hb_000868_100 Hb_000868_100 Hb_000772_060--Hb_000868_100 Hb_011077_020 Hb_011077_020 Hb_000772_060--Hb_011077_020 Hb_031527_060 Hb_031527_060 Hb_000772_060--Hb_031527_060 Hb_002571_040 Hb_002571_040 Hb_000772_060--Hb_002571_040 Hb_101733_040 Hb_101733_040 Hb_000772_060--Hb_101733_040 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0357227 0 0.0183512 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0386074 0 0.046549 0

CAGE analysis