Hb_001703_120

Information

Type -
Description -
Location Contig1703: 164253-166603
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17160g
description POPTRDRAFT_226295; hypothetical protein
nr
ID XP_011012799.1
description PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A5BMZ1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027996 PE=4 SV=1
Gene Ontology
ID GO:0009646
description PREDICTED: uncharacterized protein LOC105116966 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_120 0.0 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
2 Hb_003861_020 0.1967914281 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
3 Hb_174473_010 0.2033718137 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
4 Hb_073452_010 0.208426022 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_027402_140 0.2226982372 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
6 Hb_000193_310 0.2305400002 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
7 Hb_000684_440 0.2330952417 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
8 Hb_022148_010 0.2337603856 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
9 Hb_000772_040 0.2344909207 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
10 Hb_003170_040 0.2348303287 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
11 Hb_000959_090 0.2355941267 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022288_020 0.2358183904 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
13 Hb_020665_010 0.2360604175 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
14 Hb_010436_030 0.2394607811 - - Ribonuclease III, putative [Ricinus communis]
15 Hb_066487_010 0.2402834589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002686_380 0.241186042 - - -
17 Hb_009270_010 0.2438908336 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
18 Hb_000442_080 0.2439608263 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
19 Hb_001135_280 0.2448778502 - - -
20 Hb_085863_020 0.2451182015 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001703_120 Hb_001703_120 Hb_003861_020 Hb_003861_020 Hb_001703_120--Hb_003861_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_012979_020 Hb_012979_020 Hb_003861_020--Hb_012979_020 Hb_000136_040 Hb_000136_040 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030 Hb_012180_020 Hb_012180_020 Hb_003861_020--Hb_012180_020 Hb_010427_010 Hb_010427_010 Hb_174473_010--Hb_010427_010 Hb_003781_010 Hb_003781_010 Hb_174473_010--Hb_003781_010 Hb_000159_100 Hb_000159_100 Hb_174473_010--Hb_000159_100 Hb_004224_020 Hb_004224_020 Hb_174473_010--Hb_004224_020 Hb_003688_160 Hb_003688_160 Hb_174473_010--Hb_003688_160 Hb_002099_080 Hb_002099_080 Hb_174473_010--Hb_002099_080 Hb_000442_080 Hb_000442_080 Hb_073452_010--Hb_000442_080 Hb_000011_330 Hb_000011_330 Hb_073452_010--Hb_000011_330 Hb_000251_090 Hb_000251_090 Hb_073452_010--Hb_000251_090 Hb_002205_190 Hb_002205_190 Hb_073452_010--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_073452_010--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_073452_010--Hb_000567_380 Hb_000313_060 Hb_000313_060 Hb_027402_140--Hb_000313_060 Hb_001584_150 Hb_001584_150 Hb_027402_140--Hb_001584_150 Hb_001930_010 Hb_001930_010 Hb_027402_140--Hb_001930_010 Hb_002636_050 Hb_002636_050 Hb_027402_140--Hb_002636_050 Hb_005914_150 Hb_005914_150 Hb_027402_140--Hb_005914_150 Hb_009486_200 Hb_009486_200 Hb_027402_140--Hb_009486_200 Hb_012799_030 Hb_012799_030 Hb_000193_310--Hb_012799_030 Hb_000318_390 Hb_000318_390 Hb_000193_310--Hb_000318_390 Hb_012656_030 Hb_012656_030 Hb_000193_310--Hb_012656_030 Hb_001439_140 Hb_001439_140 Hb_000193_310--Hb_001439_140 Hb_006711_100 Hb_006711_100 Hb_000193_310--Hb_006711_100 Hb_000707_050 Hb_000707_050 Hb_000193_310--Hb_000707_050 Hb_001010_070 Hb_001010_070 Hb_000684_440--Hb_001010_070 Hb_002304_070 Hb_002304_070 Hb_000684_440--Hb_002304_070 Hb_012627_020 Hb_012627_020 Hb_000684_440--Hb_012627_020 Hb_000346_040 Hb_000346_040 Hb_000684_440--Hb_000346_040 Hb_020665_010 Hb_020665_010 Hb_000684_440--Hb_020665_010 Hb_004020_020 Hb_004020_020 Hb_000684_440--Hb_004020_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27176 0.66647 0.185969 0.341102 1.49614 5.74603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358009 0.844603 6.07504 2.63198 3.89582

CAGE analysis