Hb_001703_130

Information

Type -
Description -
Location Contig1703: 171926-178409
Sequence    

Annotation

kegg
ID tcc:TCM_011637
description Vesicle transport v-SNARE family protein isoform 1
nr
ID XP_011017845.1
description PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
swissprot
ID Q9SEL5
description Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3
trembl
ID A0A061EBQ9
description Vesicle transport v-SNARE family protein isoform 3 OS=Theobroma cacao GN=TCM_011637 PE=4 SV=1
Gene Ontology
ID GO:0012505
description vesicle transport v-snare 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15931: 172013-178351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_130 0.0 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
2 Hb_002805_170 0.0949122031 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
3 Hb_000116_570 0.1118848714 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_063409_020 0.1155444366 - - Calcium-binding protein, putative [Ricinus communis]
5 Hb_010883_080 0.1181791335 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
6 Hb_000281_010 0.1216867803 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
7 Hb_000685_080 0.1223005161 - - protein binding protein, putative [Ricinus communis]
8 Hb_001473_190 0.1223734398 - - 50S ribosomal protein L20 [Hevea brasiliensis]
9 Hb_001473_080 0.1280512953 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
10 Hb_009646_050 0.1318213861 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005535_060 0.1338261531 - - -
12 Hb_000093_130 0.1361465033 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
13 Hb_001922_130 0.1364704662 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
14 Hb_000608_040 0.1369710798 - - -
15 Hb_007951_100 0.1390361068 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_012184_050 0.1394664822 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
17 Hb_001946_240 0.1395659933 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
18 Hb_002612_010 0.1402837086 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
19 Hb_000120_570 0.1416209942 - - Mlo protein [Hevea brasiliensis]
20 Hb_009178_020 0.1425183499 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]

Gene co-expression network

sample Hb_001703_130 Hb_001703_130 Hb_002805_170 Hb_002805_170 Hb_001703_130--Hb_002805_170 Hb_000116_570 Hb_000116_570 Hb_001703_130--Hb_000116_570 Hb_063409_020 Hb_063409_020 Hb_001703_130--Hb_063409_020 Hb_010883_080 Hb_010883_080 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_000685_080 Hb_000685_080 Hb_001703_130--Hb_000685_080 Hb_012184_050 Hb_012184_050 Hb_002805_170--Hb_012184_050 Hb_007951_100 Hb_007951_100 Hb_002805_170--Hb_007951_100 Hb_002805_170--Hb_010883_080 Hb_000045_320 Hb_000045_320 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_000976_080 Hb_000976_080 Hb_063409_020--Hb_000976_080 Hb_001473_190 Hb_001473_190 Hb_063409_020--Hb_001473_190 Hb_005846_020 Hb_005846_020 Hb_063409_020--Hb_005846_020 Hb_001473_080 Hb_001473_080 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_000116_460 Hb_000116_460 Hb_000281_010--Hb_000116_460 Hb_010128_070 Hb_010128_070 Hb_000281_010--Hb_010128_070 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_000281_010--Hb_009646_050 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.275 63.2229 42.1813 8.38864 121.015 60.6603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0867 14.5584 18.551 8.86597 5.75472

CAGE analysis