Hb_001708_010

Information

Type -
Description -
Location Contig1708: 14003-15884
Sequence    

Annotation

kegg
ID mdm:103445529
description putative disease resistance protein At4g11170
nr
ID XP_008382771.1
description PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
swissprot
ID P0DKH6
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID A0A067LFQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25445 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001708_010 0.0 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
2 Hb_007441_090 0.1776701434 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
3 Hb_106688_010 0.1826517503 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_114079_010 0.1846600313 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
5 Hb_003740_040 0.1975641634 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
6 Hb_157968_010 0.2052062826 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_048183_010 0.2080998201 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_000679_200 0.2199194434 - - EIN3-binding F box protein 1 [Theobroma cacao]
9 Hb_162090_010 0.222201178 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
10 Hb_165402_010 0.2243664959 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
11 Hb_022614_010 0.2249738264 - - -
12 Hb_155541_020 0.2331168653 - - -
13 Hb_009083_030 0.2345280257 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
14 Hb_154538_010 0.2361106989 - - -
15 Hb_017014_020 0.2385836456 - - -
16 Hb_002078_190 0.2410401417 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001950_040 0.242423536 - - -
18 Hb_077573_010 0.2442560999 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_006162_020 0.2453841111 - - -
20 Hb_040747_010 0.2469264195 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]

Gene co-expression network

sample Hb_001708_010 Hb_001708_010 Hb_007441_090 Hb_007441_090 Hb_001708_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_003740_040 Hb_003740_040 Hb_001708_010--Hb_003740_040 Hb_157968_010 Hb_157968_010 Hb_001708_010--Hb_157968_010 Hb_048183_010 Hb_048183_010 Hb_001708_010--Hb_048183_010 Hb_007441_090--Hb_106688_010 Hb_066514_010 Hb_066514_010 Hb_007441_090--Hb_066514_010 Hb_165402_010 Hb_165402_010 Hb_007441_090--Hb_165402_010 Hb_018691_010 Hb_018691_010 Hb_007441_090--Hb_018691_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_106688_010--Hb_165402_010 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_000082_020 Hb_000082_020 Hb_114079_010--Hb_000082_020 Hb_183522_010 Hb_183522_010 Hb_114079_010--Hb_183522_010 Hb_041025_010 Hb_041025_010 Hb_114079_010--Hb_041025_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_010964_020 Hb_010964_020 Hb_114079_010--Hb_010964_020 Hb_155541_020 Hb_155541_020 Hb_003740_040--Hb_155541_020 Hb_003740_040--Hb_007441_090 Hb_003740_040--Hb_106688_010 Hb_001059_140 Hb_001059_140 Hb_003740_040--Hb_001059_140 Hb_003740_040--Hb_066514_010 Hb_002078_190 Hb_002078_190 Hb_157968_010--Hb_002078_190 Hb_148658_010 Hb_148658_010 Hb_157968_010--Hb_148658_010 Hb_157968_010--Hb_048183_010 Hb_116367_010 Hb_116367_010 Hb_157968_010--Hb_116367_010 Hb_001810_020 Hb_001810_020 Hb_157968_010--Hb_001810_020 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_133648_010 Hb_133648_010 Hb_048183_010--Hb_133648_010 Hb_072290_010 Hb_072290_010 Hb_048183_010--Hb_072290_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73821 14.1344 3.04432 37.3955 1.51489 24.3764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.809461 1.59528 3.12417 4.75208 1.45121

CAGE analysis