Hb_001709_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig1709: 168763-170415
Sequence    

Annotation

kegg
ID rcu:RCOM_1313880
description NAC domain-containing protein, putative
nr
ID XP_002518924.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q84WP6
description NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2
trembl
ID B9RYV5
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_1313880 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 43-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15966: 168809-169027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_080 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_000009_250 0.0821262892 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_042083_010 0.1031503991 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
4 Hb_000245_110 0.1032804053 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
5 Hb_000012_380 0.1037338502 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
6 Hb_000368_040 0.1084681505 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_005827_020 0.1137242865 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
8 Hb_000328_030 0.1256350759 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
9 Hb_006065_030 0.1260205719 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
10 Hb_008001_030 0.1273971185 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_000311_100 0.1274869469 - - conserved hypothetical protein [Ricinus communis]
12 Hb_013407_010 0.1277546887 - - hypothetical protein JCGZ_23575 [Jatropha curcas]
13 Hb_004930_020 0.1282896375 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
14 Hb_001976_100 0.1314244047 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
15 Hb_001131_050 0.1326651744 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
16 Hb_003090_190 0.1345854177 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
17 Hb_026124_020 0.1360222296 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
18 Hb_000020_180 0.1375284601 - - laccase, putative [Ricinus communis]
19 Hb_001377_230 0.1379224177 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
20 Hb_007579_030 0.137980598 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001709_080 Hb_001709_080 Hb_000009_250 Hb_000009_250 Hb_001709_080--Hb_000009_250 Hb_042083_010 Hb_042083_010 Hb_001709_080--Hb_042083_010 Hb_000245_110 Hb_000245_110 Hb_001709_080--Hb_000245_110 Hb_000012_380 Hb_000012_380 Hb_001709_080--Hb_000012_380 Hb_000368_040 Hb_000368_040 Hb_001709_080--Hb_000368_040 Hb_005827_020 Hb_005827_020 Hb_001709_080--Hb_005827_020 Hb_001976_100 Hb_001976_100 Hb_000009_250--Hb_001976_100 Hb_000009_250--Hb_000368_040 Hb_002171_050 Hb_002171_050 Hb_000009_250--Hb_002171_050 Hb_000080_100 Hb_000080_100 Hb_000009_250--Hb_000080_100 Hb_002835_070 Hb_002835_070 Hb_000009_250--Hb_002835_070 Hb_015807_090 Hb_015807_090 Hb_042083_010--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_042083_010--Hb_000086_490 Hb_000328_030 Hb_000328_030 Hb_042083_010--Hb_000328_030 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_005523_030 Hb_005523_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_000245_110--Hb_000012_380 Hb_003090_190 Hb_003090_190 Hb_000245_110--Hb_003090_190 Hb_000245_110--Hb_042083_010 Hb_000245_110--Hb_000328_030 Hb_026124_020 Hb_026124_020 Hb_000245_110--Hb_026124_020 Hb_005614_020 Hb_005614_020 Hb_000245_110--Hb_005614_020 Hb_000012_380--Hb_026124_020 Hb_148262_010 Hb_148262_010 Hb_000012_380--Hb_148262_010 Hb_000012_380--Hb_003090_190 Hb_000012_380--Hb_042083_010 Hb_000012_380--Hb_000328_030 Hb_000856_030 Hb_000856_030 Hb_000368_040--Hb_000856_030 Hb_001680_050 Hb_001680_050 Hb_000368_040--Hb_001680_050 Hb_005183_070 Hb_005183_070 Hb_000368_040--Hb_005183_070 Hb_029665_010 Hb_029665_010 Hb_000368_040--Hb_029665_010 Hb_000317_170 Hb_000317_170 Hb_000368_040--Hb_000317_170 Hb_000311_100 Hb_000311_100 Hb_005827_020--Hb_000311_100 Hb_000020_180 Hb_000020_180 Hb_005827_020--Hb_000020_180 Hb_008001_030 Hb_008001_030 Hb_005827_020--Hb_008001_030 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_001712_030 Hb_001712_030 Hb_005827_020--Hb_001712_030 Hb_005827_020--Hb_000328_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141385 4.82479 0.483489 24.1805 0.0671335 0.012401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.597147 16.1014

CAGE analysis