Hb_001709_130

Information

Type -
Description -
Location Contig1709: 211960-215765
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9RK74
description Uncharacterized protein OS=Morus notabilis GN=L484_001429 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_130 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000078_170 0.1663818687 - - -
3 Hb_000330_080 0.1735816936 - - auxilin, putative [Ricinus communis]
4 Hb_011639_150 0.17484711 - - -
5 Hb_004884_020 0.1956258457 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
6 Hb_001009_100 0.1974966299 - - -
7 Hb_004361_020 0.1992538027 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
8 Hb_032920_100 0.2154922105 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
9 Hb_008556_020 0.2276930552 - - -
10 Hb_001019_120 0.2285952745 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
11 Hb_000236_090 0.2304061438 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
12 Hb_005962_010 0.2324986847 - - -
13 Hb_000139_150 0.2337831564 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
14 Hb_067776_020 0.2359658475 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_183574_010 0.2376285172 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_005527_030 0.2446629462 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
17 Hb_003388_030 0.2504618252 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
18 Hb_008123_010 0.2522734269 - - -
19 Hb_001390_010 0.2534156477 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
20 Hb_045870_010 0.2539538506 - - -

Gene co-expression network

sample Hb_001709_130 Hb_001709_130 Hb_000078_170 Hb_000078_170 Hb_001709_130--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_001709_130--Hb_000330_080 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_004884_020 Hb_004884_020 Hb_001709_130--Hb_004884_020 Hb_001009_100 Hb_001009_100 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_005962_010 Hb_005962_010 Hb_000078_170--Hb_005962_010 Hb_000078_170--Hb_011639_150 Hb_000078_170--Hb_000330_080 Hb_008556_020 Hb_008556_020 Hb_000078_170--Hb_008556_020 Hb_002311_230 Hb_002311_230 Hb_000078_170--Hb_002311_230 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_008123_010 Hb_008123_010 Hb_000330_080--Hb_008123_010 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_011639_150--Hb_005962_010 Hb_011639_150--Hb_008556_020 Hb_119886_040 Hb_119886_040 Hb_011639_150--Hb_119886_040 Hb_011639_150--Hb_002311_230 Hb_004884_020--Hb_001009_100 Hb_003388_030 Hb_003388_030 Hb_004884_020--Hb_003388_030 Hb_004884_020--Hb_003058_020 Hb_004987_070 Hb_004987_070 Hb_004884_020--Hb_004987_070 Hb_000384_080 Hb_000384_080 Hb_004884_020--Hb_000384_080 Hb_001117_160 Hb_001117_160 Hb_004884_020--Hb_001117_160 Hb_001009_100--Hb_003388_030 Hb_001009_100--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_067776_020 Hb_067776_020 Hb_001009_100--Hb_067776_020 Hb_001019_120 Hb_001019_120 Hb_004361_020--Hb_001019_120 Hb_183574_010 Hb_183574_010 Hb_004361_020--Hb_183574_010 Hb_036702_010 Hb_036702_010 Hb_004361_020--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_004361_020--Hb_000236_090 Hb_021068_010 Hb_021068_010 Hb_004361_020--Hb_021068_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.813705 0.517505 0.195899 0.34179 2.41173 2.22709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0422997 0.133091 0 0.666877 2.26785

CAGE analysis