Hb_001710_010

Information

Type -
Description -
Location Contig1710: 13452-14682
Sequence    

Annotation

kegg
ID tcc:TCM_001832
description hypothetical protein
nr
ID XP_007048818.1
description Uncharacterized protein TCM_001832 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DK05
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001832 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001710_010 0.0 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
2 Hb_003050_380 0.0581901498 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
3 Hb_001170_020 0.066354297 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005754_050 0.0680442275 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
5 Hb_002162_020 0.0693738463 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
6 Hb_002592_040 0.0709374419 - - ACC oxidase 3 [Hevea brasiliensis]
7 Hb_005888_020 0.071087341 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
8 Hb_001862_040 0.072107347 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
9 Hb_003032_080 0.0722403473 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010288_070 0.0733148487 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
11 Hb_002304_030 0.0762232062 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
12 Hb_000985_150 0.0778867025 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
13 Hb_008484_080 0.0782224607 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
14 Hb_001717_060 0.078389362 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
15 Hb_023313_050 0.0798926672 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
16 Hb_000977_250 0.0799494742 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_000297_190 0.080346417 - - cell wall invertase [Manihot esculenta]
18 Hb_009193_020 0.0811357105 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
19 Hb_099182_010 0.082620236 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
20 Hb_002434_040 0.0829630153 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]

Gene co-expression network

sample Hb_001710_010 Hb_001710_010 Hb_003050_380 Hb_003050_380 Hb_001710_010--Hb_003050_380 Hb_001170_020 Hb_001170_020 Hb_001710_010--Hb_001170_020 Hb_005754_050 Hb_005754_050 Hb_001710_010--Hb_005754_050 Hb_002162_020 Hb_002162_020 Hb_001710_010--Hb_002162_020 Hb_002592_040 Hb_002592_040 Hb_001710_010--Hb_002592_040 Hb_005888_020 Hb_005888_020 Hb_001710_010--Hb_005888_020 Hb_003050_380--Hb_001170_020 Hb_003050_380--Hb_005888_020 Hb_010288_070 Hb_010288_070 Hb_003050_380--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_003050_380--Hb_002304_030 Hb_000297_190 Hb_000297_190 Hb_003050_380--Hb_000297_190 Hb_003032_080 Hb_003032_080 Hb_003050_380--Hb_003032_080 Hb_001170_020--Hb_005888_020 Hb_001170_020--Hb_000297_190 Hb_001170_020--Hb_002304_030 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_005754_050--Hb_001170_020 Hb_005754_050--Hb_003050_380 Hb_005754_050--Hb_005888_020 Hb_005754_050--Hb_002304_030 Hb_005754_050--Hb_010288_070 Hb_005754_050--Hb_000977_250 Hb_000002_140 Hb_000002_140 Hb_002162_020--Hb_000002_140 Hb_140249_020 Hb_140249_020 Hb_002162_020--Hb_140249_020 Hb_000008_160 Hb_000008_160 Hb_002162_020--Hb_000008_160 Hb_001433_080 Hb_001433_080 Hb_002162_020--Hb_001433_080 Hb_001089_010 Hb_001089_010 Hb_002162_020--Hb_001089_010 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_013405_110 Hb_013405_110 Hb_002592_040--Hb_013405_110 Hb_005375_090 Hb_005375_090 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_003747_090 Hb_003747_090 Hb_002592_040--Hb_003747_090 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_002304_030 Hb_005888_020--Hb_010288_070 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.49631 0.330224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0240093 2.0009

CAGE analysis