Hb_001711_030

Information

Type -
Description -
Location Contig1711: 19865-32626
Sequence    

Annotation

kegg
ID rcu:RCOM_0864970
description hypothetical protein
nr
ID XP_012082616.1
description PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19501 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15983: 20974-32552
cDNA
(Sanger)
(ID:Location)		 047_F14.ab1: 20986-32435

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_030 0.0 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
2 Hb_001863_480 0.0675018837 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
3 Hb_000051_040 0.0758318271 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
4 Hb_012522_030 0.0761176334 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_002527_070 0.0776926327 - - axonemal dynein light chain, putative [Ricinus communis]
6 Hb_000922_270 0.0805597866 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
7 Hb_001439_170 0.0850174285 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
8 Hb_044662_070 0.0864110101 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
9 Hb_007021_020 0.087848527 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
10 Hb_003408_020 0.0885989905 - - hypothetical protein RCOM_0453040 [Ricinus communis]
11 Hb_007924_020 0.0900778302 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_002539_080 0.0921240135 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
13 Hb_084849_020 0.0922738091 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_002282_020 0.0930008843 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
15 Hb_002326_030 0.0959593958 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
16 Hb_024650_020 0.0960708291 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
17 Hb_003175_040 0.0965384193 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
18 Hb_001427_120 0.0978905798 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_007666_020 0.0990374918 - - alkaline phytoceramidase, putative [Ricinus communis]
20 Hb_002352_010 0.0990625022 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001711_030 Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_007021_020 Hb_007021_020 Hb_000051_040--Hb_007021_020 Hb_000051_040--Hb_000922_270 Hb_000261_460 Hb_000261_460 Hb_000051_040--Hb_000261_460 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_000051_040--Hb_003408_020 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_001439_170--Hb_002539_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.7153 11.5444 14.5182 16.9312 34.9076 56.8462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
130.624 90.9853 97.8109 18.2356 11.5951

CAGE analysis