Hb_001711_060

Information

Type -
Description -
Location Contig1711: 39565-44627
Sequence    

Annotation

kegg
ID rcu:RCOM_0864990
description Ferredoxin-2, putative
nr
ID XP_012080889.1
description PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
swissprot
ID P0A3C8
description Ferredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=petF PE=1 SV=2
trembl
ID A0A067K361
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16944 PE=4 SV=1
Gene Ontology
ID GO:0009055
description ferredoxin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15987: 39600-44618
cDNA
(Sanger)
(ID:Location)		 008_L22.ab1: 39605-44546 , 035_J05.ab1: 39605-44618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_060 0.0 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
2 Hb_001386_090 0.0813222243 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
3 Hb_001519_170 0.0852856357 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
4 Hb_003397_030 0.1105948908 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
5 Hb_012653_030 0.1184791258 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000146_030 0.1190232843 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
7 Hb_000438_130 0.1194126823 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
8 Hb_007217_010 0.1203224424 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
9 Hb_001366_350 0.1210602957 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
10 Hb_001959_060 0.1221747988 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
11 Hb_012545_040 0.1250398587 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_011476_030 0.1256105018 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
13 Hb_000169_070 0.1263767079 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_001638_310 0.1270028657 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
15 Hb_000000_180 0.1274831128 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_000574_470 0.1288013723 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002498_160 0.1289152224 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
18 Hb_140360_010 0.129078383 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
19 Hb_000005_130 0.1312450239 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
20 Hb_002986_090 0.1322762721 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001711_060 Hb_001711_060 Hb_001386_090 Hb_001386_090 Hb_001711_060--Hb_001386_090 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_001386_090--Hb_003397_030 Hb_001386_090--Hb_000438_130 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001366_350 Hb_001366_350 Hb_001519_170--Hb_001366_350 Hb_001519_170--Hb_001386_090 Hb_003397_030--Hb_000169_070 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_003397_030--Hb_000438_130 Hb_000194_010 Hb_000194_010 Hb_012653_030--Hb_000194_010 Hb_005618_080 Hb_005618_080 Hb_012653_030--Hb_005618_080 Hb_002044_020 Hb_002044_020 Hb_012653_030--Hb_002044_020 Hb_012653_030--Hb_000438_130 Hb_000473_050 Hb_000473_050 Hb_012653_030--Hb_000473_050 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_000438_130--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73059 6.10859 60.2354 14.1815 4.79315 4.26167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62307 9.55629 8.63614 4.08658 37.6862

CAGE analysis