Hb_001711_140

Information

Type -
Description -
Location Contig1711: 187040-189022
Sequence    

Annotation

kegg
ID rcu:RCOM_0834650
description Endo-1,4-beta-xylanase C precursor, putative (EC:3.2.1.8)
nr
ID XP_002532418.1
description Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
swissprot
ID P26514
description Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2
trembl
ID B9T2E9
description Endo-1,4-beta-xylanase C, putative OS=Ricinus communis GN=RCOM_0834650 PE=4 SV=1
Gene Ontology
ID GO:0004553
description endo- -beta-xylanase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_140 0.0 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
2 Hb_002477_190 0.0412587591 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
3 Hb_005010_030 0.0553794919 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
4 Hb_009315_010 0.0567630137 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_029587_010 0.0682741064 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
6 Hb_000462_010 0.0732099327 - - hypothetical protein VITISV_041696 [Vitis vinifera]
7 Hb_005843_010 0.0843426479 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_006615_090 0.0847182336 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_144550_010 0.0856156503 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
10 Hb_001433_090 0.0858313102 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
11 Hb_005678_020 0.0872231606 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000002_110 0.0897467587 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
13 Hb_010589_010 0.0902962761 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
14 Hb_005066_040 0.0944449844 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_001500_130 0.0954315714 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
16 Hb_000739_280 0.0982319304 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_003925_120 0.0988402599 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_001699_110 0.1014318788 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
19 Hb_020956_030 0.1015077764 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
20 Hb_001199_110 0.1017213118 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001711_140 Hb_001711_140 Hb_002477_190 Hb_002477_190 Hb_001711_140--Hb_002477_190 Hb_005010_030 Hb_005010_030 Hb_001711_140--Hb_005010_030 Hb_009315_010 Hb_009315_010 Hb_001711_140--Hb_009315_010 Hb_029587_010 Hb_029587_010 Hb_001711_140--Hb_029587_010 Hb_000462_010 Hb_000462_010 Hb_001711_140--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_001711_140--Hb_005843_010 Hb_002477_190--Hb_005010_030 Hb_006615_090 Hb_006615_090 Hb_002477_190--Hb_006615_090 Hb_002477_190--Hb_029587_010 Hb_001199_110 Hb_001199_110 Hb_002477_190--Hb_001199_110 Hb_144550_010 Hb_144550_010 Hb_002477_190--Hb_144550_010 Hb_005010_030--Hb_000462_010 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005010_030--Hb_005843_010 Hb_009315_010--Hb_000462_010 Hb_009315_010--Hb_005843_010 Hb_009315_010--Hb_005678_020 Hb_036790_110 Hb_036790_110 Hb_009315_010--Hb_036790_110 Hb_009315_010--Hb_005010_030 Hb_010589_010 Hb_010589_010 Hb_029587_010--Hb_010589_010 Hb_003549_100 Hb_003549_100 Hb_029587_010--Hb_003549_100 Hb_029587_010--Hb_144550_010 Hb_001397_020 Hb_001397_020 Hb_029587_010--Hb_001397_020 Hb_000462_010--Hb_005678_020 Hb_000462_010--Hb_005843_010 Hb_000462_010--Hb_036790_110 Hb_005843_010--Hb_005678_020 Hb_000708_020 Hb_000708_020 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0123459 0.0462308 0.103186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.167173

CAGE analysis