Hb_001712_080

Information

Type -
Description -
Location Contig1712: 67573-68803
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_080 0.0 - - -
2 Hb_005928_070 0.1728639293 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
3 Hb_002918_190 0.2055917936 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
4 Hb_059978_010 0.2120659337 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_006995_010 0.2164958957 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
6 Hb_005542_090 0.2242349276 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
7 Hb_007083_020 0.2242830112 - - hypothetical protein F775_15403 [Aegilops tauschii]
8 Hb_012675_080 0.2276992413 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
9 Hb_003656_150 0.2289619381 - - -
10 Hb_000085_130 0.22992387 - - -
11 Hb_183522_010 0.2313921663 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_000084_130 0.2314113243 - - -
13 Hb_000789_150 0.2329164499 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
14 Hb_075745_010 0.2332596852 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
15 Hb_002079_040 0.2367091492 - - hypothetical protein VITISV_018542 [Vitis vinifera]
16 Hb_002972_060 0.2370215338 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_006162_020 0.2376064434 - - -
18 Hb_008096_020 0.2384785293 - - -
19 Hb_000289_080 0.239743082 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000034_090 0.2407220483 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]

Gene co-expression network

sample Hb_001712_080 Hb_001712_080 Hb_005928_070 Hb_005928_070 Hb_001712_080--Hb_005928_070 Hb_002918_190 Hb_002918_190 Hb_001712_080--Hb_002918_190 Hb_059978_010 Hb_059978_010 Hb_001712_080--Hb_059978_010 Hb_006995_010 Hb_006995_010 Hb_001712_080--Hb_006995_010 Hb_005542_090 Hb_005542_090 Hb_001712_080--Hb_005542_090 Hb_007083_020 Hb_007083_020 Hb_001712_080--Hb_007083_020 Hb_005928_070--Hb_059978_010 Hb_002379_040 Hb_002379_040 Hb_005928_070--Hb_002379_040 Hb_005928_070--Hb_006995_010 Hb_000289_080 Hb_000289_080 Hb_005928_070--Hb_000289_080 Hb_120052_010 Hb_120052_010 Hb_005928_070--Hb_120052_010 Hb_082195_010 Hb_082195_010 Hb_002918_190--Hb_082195_010 Hb_002972_060 Hb_002972_060 Hb_002918_190--Hb_002972_060 Hb_002918_190--Hb_000289_080 Hb_011200_010 Hb_011200_010 Hb_002918_190--Hb_011200_010 Hb_002918_190--Hb_059978_010 Hb_021888_040 Hb_021888_040 Hb_059978_010--Hb_021888_040 Hb_013394_100 Hb_013394_100 Hb_059978_010--Hb_013394_100 Hb_059978_010--Hb_002379_040 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040 Hb_003656_150 Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_006995_010--Hb_003029_100 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.94552 2.7219 26.0896 1.8027 35.1857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57036 4.47817 0 0.838681 0

CAGE analysis