Hb_001715_060

Information

Type -
Description -
Location Contig1715: 111329-112785
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05610g
description POPTRDRAFT_756811; gibberellin 3-beta-hydroxylase family protein
nr
ID XP_012073283.1
description PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
swissprot
ID O24648
description Gibberellin 3-beta-dioxygenase 1 OS=Pisum sativum GN=LE PE=1 SV=1
trembl
ID A0A067KZA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06225 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 3-beta-dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16035: 111157-112342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001715_060 0.0 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
2 Hb_059275_010 0.0808918513 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
3 Hb_001638_340 0.0929775132 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007357_010 0.0947303879 - - cytochrome P450, putative [Ricinus communis]
5 Hb_029977_030 0.0986561492 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
6 Hb_008895_020 0.1012227252 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_124677_090 0.1121579543 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002626_060 0.1139531038 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
9 Hb_009070_010 0.1151511718 - - Spermidine synthase, putative [Ricinus communis]
10 Hb_006651_030 0.1165106875 - - unnamed protein product [Homo sapiens]
11 Hb_011574_020 0.1174068425 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
12 Hb_007426_190 0.122385477 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
13 Hb_020738_010 0.1278890059 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_051408_010 0.1284237359 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_001477_060 0.1318007229 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
16 Hb_001022_070 0.1365165783 - - cell wall invertase [Manihot esculenta]
17 Hb_003248_030 0.1371163192 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
18 Hb_000227_300 0.1372837815 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001794_040 0.1381337148 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
20 Hb_003502_040 0.139438356 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_001715_060 Hb_001715_060 Hb_059275_010 Hb_059275_010 Hb_001715_060--Hb_059275_010 Hb_001638_340 Hb_001638_340 Hb_001715_060--Hb_001638_340 Hb_007357_010 Hb_007357_010 Hb_001715_060--Hb_007357_010 Hb_029977_030 Hb_029977_030 Hb_001715_060--Hb_029977_030 Hb_008895_020 Hb_008895_020 Hb_001715_060--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001715_060--Hb_124677_090 Hb_020738_010 Hb_020738_010 Hb_059275_010--Hb_020738_010 Hb_011574_020 Hb_011574_020 Hb_059275_010--Hb_011574_020 Hb_059275_010--Hb_029977_030 Hb_000586_110 Hb_000586_110 Hb_059275_010--Hb_000586_110 Hb_059275_010--Hb_001638_340 Hb_001638_340--Hb_011574_020 Hb_001638_340--Hb_008895_020 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_000012_350 Hb_000012_350 Hb_001638_340--Hb_000012_350 Hb_001277_370 Hb_001277_370 Hb_007357_010--Hb_001277_370 Hb_007357_010--Hb_001477_060 Hb_007357_010--Hb_124677_090 Hb_007632_230 Hb_007632_230 Hb_007357_010--Hb_007632_230 Hb_001221_070 Hb_001221_070 Hb_007357_010--Hb_001221_070 Hb_006651_030 Hb_006651_030 Hb_029977_030--Hb_006651_030 Hb_096027_010 Hb_096027_010 Hb_029977_030--Hb_096027_010 Hb_029977_030--Hb_008895_020 Hb_011853_020 Hb_011853_020 Hb_029977_030--Hb_011853_020 Hb_008895_020--Hb_006651_030 Hb_008895_020--Hb_124677_090 Hb_008895_020--Hb_001477_060 Hb_008895_020--Hb_059275_010 Hb_124677_090--Hb_001477_060 Hb_054926_010 Hb_054926_010 Hb_124677_090--Hb_054926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.527321 1.23645 1.56603 0.0179736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.497789

CAGE analysis