Hb_001716_040

Information

Type -
Description -
Location Contig1716: 43796-60447
Sequence    

Annotation

kegg
ID rcu:RCOM_1591490
description ribonuclease p/mrp subunit, putative
nr
ID XP_002510261.1
description ribonuclease p/mrp subunit, putative [Ricinus communis]
swissprot
ID O48722
description Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=HO2 PE=2 SV=2
trembl
ID B9R7G8
description Ribonuclease p/mrp subunit, putative OS=Ricinus communis GN=RCOM_1591490 PE=4 SV=1
Gene Ontology
ID GO:0004392
description ribonuclease p mrp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16051: 43919-53386 , PASA_asmbl_16052: 49838-50139 , PASA_asmbl_16055: 58349-58809 , PASA_asmbl_16056: 58905-59702 , PASA_asmbl_16057: 59755-60231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001716_040 0.0 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
2 Hb_000640_040 0.0433435194 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_005582_040 0.0545916993 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
4 Hb_008948_020 0.0566467335 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
5 Hb_004435_030 0.0579061576 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
6 Hb_003943_110 0.0631571909 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
7 Hb_000504_180 0.0649624139 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_001478_010 0.0652394662 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
9 Hb_002830_010 0.0662736389 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
10 Hb_002542_110 0.0691506482 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
11 Hb_002686_090 0.0703138393 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
12 Hb_001157_240 0.0716604919 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
13 Hb_008033_040 0.0719963954 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
14 Hb_002272_030 0.0727053553 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
15 Hb_000635_060 0.0730826253 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
16 Hb_010068_080 0.0731126585 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
17 Hb_001304_110 0.0761242687 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
18 Hb_000805_100 0.0772783007 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_004787_050 0.0774019587 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
20 Hb_027073_020 0.0779540252 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001716_040 Hb_001716_040 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_005582_040--Hb_001304_110 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_007413_010 Hb_007413_010 Hb_008948_020--Hb_007413_010 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_008948_020--Hb_004435_030 Hb_008948_020--Hb_005582_040 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_004435_030--Hb_000640_040 Hb_004435_030--Hb_005582_040 Hb_004435_030--Hb_001635_120 Hb_003943_110--Hb_001157_240 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_000504_180--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2189 4.17497 2.93087 3.69952 1.83673 2.38173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60359 3.49141 3.8672 4.24636 5.31528

CAGE analysis