Hb_001717_010

Information

Type -
Description -
Location Contig1717: 14426-16683
Sequence    

Annotation

kegg
ID rcu:RCOM_1109740
description F-box and wd40 domain protein, putative
nr
ID XP_002521630.1
description F-box and wd40 domain protein, putative [Ricinus communis]
swissprot
ID Q94AD8
description F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1
trembl
ID B9S6L1
description F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_1109740 PE=4 SV=1
Gene Ontology
ID GO:0016788
description f-box wd-40 repeat-containing protein at5g21040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001717_010 0.0 - - F-box and wd40 domain protein, putative [Ricinus communis]
2 Hb_005245_100 0.0666496705 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
3 Hb_000029_060 0.0748218819 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
4 Hb_026048_110 0.0801952917 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
5 Hb_000329_230 0.0803557594 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
6 Hb_003607_130 0.0807875175 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_004916_010 0.0825597084 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
8 Hb_001259_050 0.0835324709 - - calcium lipid binding protein, putative [Ricinus communis]
9 Hb_002272_030 0.0856188446 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
10 Hb_001863_360 0.086556149 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
11 Hb_006275_020 0.0874593849 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
12 Hb_000015_170 0.0879841359 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007017_040 0.0888900982 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
14 Hb_020178_040 0.0892527071 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000347_400 0.0894156552 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
16 Hb_004994_240 0.0898276704 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
17 Hb_000951_130 0.0910062878 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
18 Hb_003929_070 0.0924387011 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
19 Hb_001716_020 0.0926080618 - - hydrolase, putative [Ricinus communis]
20 Hb_062226_130 0.0927771523 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001717_010 Hb_001717_010 Hb_005245_100 Hb_005245_100 Hb_001717_010--Hb_005245_100 Hb_000029_060 Hb_000029_060 Hb_001717_010--Hb_000029_060 Hb_026048_110 Hb_026048_110 Hb_001717_010--Hb_026048_110 Hb_000329_230 Hb_000329_230 Hb_001717_010--Hb_000329_230 Hb_003607_130 Hb_003607_130 Hb_001717_010--Hb_003607_130 Hb_004916_010 Hb_004916_010 Hb_001717_010--Hb_004916_010 Hb_005245_100--Hb_003607_130 Hb_000925_130 Hb_000925_130 Hb_005245_100--Hb_000925_130 Hb_000088_170 Hb_000088_170 Hb_005245_100--Hb_000088_170 Hb_000069_310 Hb_000069_310 Hb_005245_100--Hb_000069_310 Hb_062226_130 Hb_062226_130 Hb_005245_100--Hb_062226_130 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_000256_090 Hb_000256_090 Hb_026048_110--Hb_000256_090 Hb_005162_090 Hb_005162_090 Hb_026048_110--Hb_005162_090 Hb_010872_070 Hb_010872_070 Hb_026048_110--Hb_010872_070 Hb_005563_070 Hb_005563_070 Hb_026048_110--Hb_005563_070 Hb_006275_020 Hb_006275_020 Hb_026048_110--Hb_006275_020 Hb_001473_160 Hb_001473_160 Hb_000329_230--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_000329_230--Hb_000072_120 Hb_003617_020 Hb_003617_020 Hb_000329_230--Hb_003617_020 Hb_000390_250 Hb_000390_250 Hb_000329_230--Hb_000390_250 Hb_003906_200 Hb_003906_200 Hb_000329_230--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000329_230--Hb_001674_030 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_004916_010--Hb_003849_110 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_004916_010--Hb_001716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62578 5.01487 3.66695 4.71208 1.89371 2.46166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57964 3.42995 4.06106 2.30199 3.5863

CAGE analysis