Hb_001718_100

Information

Type -
Description -
Location Contig1718: 183645-188007
Sequence    

Annotation

kegg
ID tcc:TCM_015820
description Casein kinase II beta chain 1 isoform 1
nr
ID XP_012075450.1
description PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
swissprot
ID P40228
description Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1
trembl
ID A0A067LNE5
description Casein kinase II subunit beta OS=Jatropha curcas GN=JCGZ_11897 PE=3 SV=1
Gene Ontology
ID GO:0005956
description casein kinase ii subunit beta-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16092: 183503-187992
cDNA
(Sanger)
(ID:Location)		 028_F16.ab1: 183801-187583

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001718_100 0.0 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
2 Hb_001427_120 0.0493895745 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
3 Hb_071736_020 0.0566081405 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
4 Hb_002078_450 0.0604036701 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_000086_570 0.0617318405 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
6 Hb_000089_160 0.0633125692 - - 60S ribosomal protein L5B [Hevea brasiliensis]
7 Hb_001691_210 0.0668610675 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
8 Hb_000205_270 0.0690666963 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
9 Hb_084849_020 0.0699521825 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_005686_110 0.0709365842 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
11 Hb_021650_030 0.0727254689 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
12 Hb_000956_010 0.0746189468 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
13 Hb_002028_130 0.0749738659 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
14 Hb_000087_020 0.0760479243 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
15 Hb_002025_320 0.0768584278 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
16 Hb_002716_070 0.0776452761 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_003927_130 0.0784367331 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
18 Hb_001369_050 0.0785776143 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
19 Hb_001258_080 0.0826600181 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
20 Hb_003175_040 0.0833453651 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001718_100 Hb_001718_100 Hb_001427_120 Hb_001427_120 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_071736_020--Hb_002078_450 Hb_071736_020--Hb_000086_570 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_002078_450--Hb_022250_040 Hb_000086_570--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_000089_160--Hb_001691_210 Hb_000089_160--Hb_000086_570 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
138.699 34.8667 28.0778 58.2904 129.137 230.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
260.854 256.995 233.514 79.196 29.1859

CAGE analysis