Hb_001720_010

Information

Type -
Description -
Location Contig1720: 3883-9510
Sequence    

Annotation

kegg
ID cit:102621748
description TMV resistance protein N-like
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KRT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04984 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16209: 7159-8981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001720_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_001288_080 0.0642809132 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
3 Hb_001610_110 0.0863979243 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_001623_140 0.089536057 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
5 Hb_004324_340 0.0947071117 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001168_040 0.0961197904 - - -
7 Hb_000244_300 0.0984232371 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
8 Hb_002495_070 0.0993394289 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
9 Hb_086639_070 0.1033518885 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
10 Hb_173953_010 0.1046979529 - - hypothetical protein RCOM_1267370 [Ricinus communis]
11 Hb_000621_080 0.1052775132 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001828_200 0.1056560716 - - ribosomal protein L13 [Populus trichocarpa]
13 Hb_054865_090 0.10858991 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
14 Hb_001898_230 0.1103532537 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
15 Hb_003878_140 0.1110826659 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
16 Hb_052764_050 0.1117047197 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
17 Hb_007164_020 0.111723148 - - hypothetical protein glysoja_025872 [Glycine soja]
18 Hb_019962_030 0.1118933895 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
19 Hb_012799_110 0.1120434797 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
20 Hb_005333_020 0.1121606736 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001720_010 Hb_001720_010 Hb_001288_080 Hb_001288_080 Hb_001720_010--Hb_001288_080 Hb_001610_110 Hb_001610_110 Hb_001720_010--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_001720_010--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001720_010--Hb_004324_340 Hb_001168_040 Hb_001168_040 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300 Hb_001288_080--Hb_001610_110 Hb_052764_050 Hb_052764_050 Hb_001288_080--Hb_052764_050 Hb_001288_080--Hb_001168_040 Hb_001288_080--Hb_001623_140 Hb_001288_080--Hb_004324_340 Hb_001610_110--Hb_001623_140 Hb_001610_110--Hb_052764_050 Hb_001610_110--Hb_004324_340 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_001623_140--Hb_001168_040 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_001623_140--Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_033095_020 Hb_033095_020 Hb_001168_040--Hb_033095_020 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_000394_190 Hb_000394_190 Hb_001168_040--Hb_000394_190 Hb_000244_300--Hb_000394_190 Hb_000663_040 Hb_000663_040 Hb_000244_300--Hb_000663_040 Hb_000359_330 Hb_000359_330 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_003849_060 Hb_003849_060 Hb_000244_300--Hb_003849_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0891 9.5047 3.53429 1.89594 8.87425 10.4691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47642 9.92758 4.34109 2.45392 1.09287

CAGE analysis