Hb_001720_050

Information

Type -
Description -
Location Contig1720: 62262-75226
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02030g
description POPTRDRAFT_562244; cell division cycle protein 48
nr
ID XP_012066162.1
description PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
swissprot
ID F4IAE9
description ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1
trembl
ID A0A067L2X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23743 PE=3 SV=1
Gene Ontology
ID GO:0005515
description atpase family aaa domain-containing protein at1g05910

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16211: 65730-68523 , PASA_asmbl_16213: 68541-75000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001720_050 0.0 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
2 Hb_003777_330 0.0507611127 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
3 Hb_000421_260 0.0563131023 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
4 Hb_000418_100 0.0631001019 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
5 Hb_033642_010 0.0658678247 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
6 Hb_002890_340 0.0704409951 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_000152_820 0.0730407542 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
8 Hb_000062_240 0.0735240096 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
9 Hb_004600_040 0.0744973855 - - -
10 Hb_181235_010 0.0768000155 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
11 Hb_028872_140 0.0779481858 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
12 Hb_015306_020 0.0795821849 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
13 Hb_009111_050 0.0802236291 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
14 Hb_000803_190 0.0802357067 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_002154_030 0.0802724739 - - RNA binding protein, putative [Ricinus communis]
16 Hb_001030_120 0.0803440084 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_003642_060 0.0809255353 - - hypothetical protein RCOM_1189860 [Ricinus communis]
18 Hb_010710_110 0.0817121348 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
19 Hb_010710_010 0.0822772758 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
20 Hb_007951_050 0.0847360688 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001720_050 Hb_001720_050 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_000923_020 Hb_000923_020 Hb_003777_330--Hb_000923_020 Hb_181235_010 Hb_181235_010 Hb_003777_330--Hb_181235_010 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020 Hb_000421_260--Hb_002890_340 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000421_260--Hb_004600_040 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_000418_100--Hb_082609_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_002890_340--Hb_009111_050 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000317_020 Hb_000317_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.86732 5.92442 2.55943 2.37847 12.4883 15.2055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75482 9.86785 12.0701 5.92892 2.92335

CAGE analysis