Hb_001722_030

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig1722: 72317-73297
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11790g
description POPTRDRAFT_769492; hypothetical protein
nr
ID XP_011021788.1
description PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HW25
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11790g PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_030 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
2 Hb_011401_010 0.0725558379 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_002231_050 0.1077210413 - - -
4 Hb_106159_010 0.1874804421 - - -
5 Hb_002928_100 0.2496842118 - - -
6 Hb_007792_010 0.3188953819 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_002205_200 0.3216955367 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
8 Hb_004413_040 0.3244634509 - - -
9 Hb_115784_010 0.3328907838 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_029162_020 0.3566299351 - - -
11 Hb_048610_010 0.3631147315 - - -
12 Hb_010128_110 0.3679121047 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
13 Hb_002135_040 0.3853522509 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
14 Hb_163115_010 0.3930881621 - - -
15 Hb_144101_010 0.393414213 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
16 Hb_027014_010 0.3934282008 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_004162_300 0.3938955972 - - monovalent cation:proton antiporter, putative [Ricinus communis]
18 Hb_010812_090 0.3962997237 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
19 Hb_183366_010 0.3963974756 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_001809_040 0.3982442603 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]

Gene co-expression network

sample Hb_001722_030 Hb_001722_030 Hb_011401_010 Hb_011401_010 Hb_001722_030--Hb_011401_010 Hb_002231_050 Hb_002231_050 Hb_001722_030--Hb_002231_050 Hb_106159_010 Hb_106159_010 Hb_001722_030--Hb_106159_010 Hb_002928_100 Hb_002928_100 Hb_001722_030--Hb_002928_100 Hb_007792_010 Hb_007792_010 Hb_001722_030--Hb_007792_010 Hb_002205_200 Hb_002205_200 Hb_001722_030--Hb_002205_200 Hb_011401_010--Hb_002231_050 Hb_011401_010--Hb_106159_010 Hb_011401_010--Hb_002928_100 Hb_011401_010--Hb_007792_010 Hb_115784_010 Hb_115784_010 Hb_011401_010--Hb_115784_010 Hb_002231_050--Hb_106159_010 Hb_002231_050--Hb_007792_010 Hb_002231_050--Hb_002928_100 Hb_002231_050--Hb_115784_010 Hb_004413_040 Hb_004413_040 Hb_106159_010--Hb_004413_040 Hb_106159_010--Hb_002205_200 Hb_000875_100 Hb_000875_100 Hb_106159_010--Hb_000875_100 Hb_048610_010 Hb_048610_010 Hb_002928_100--Hb_048610_010 Hb_026766_010 Hb_026766_010 Hb_002928_100--Hb_026766_010 Hb_029162_020 Hb_029162_020 Hb_002928_100--Hb_029162_020 Hb_002094_020 Hb_002094_020 Hb_002928_100--Hb_002094_020 Hb_005539_300 Hb_005539_300 Hb_002928_100--Hb_005539_300 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_153231_040 Hb_153231_040 Hb_007792_010--Hb_153231_040 Hb_002307_130 Hb_002307_130 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_036285_010 Hb_036285_010 Hb_002205_200--Hb_036285_010 Hb_162999_010 Hb_162999_010 Hb_002205_200--Hb_162999_010 Hb_174107_010 Hb_174107_010 Hb_002205_200--Hb_174107_010 Hb_010588_010 Hb_010588_010 Hb_002205_200--Hb_010588_010 Hb_030765_010 Hb_030765_010 Hb_002205_200--Hb_030765_010 Hb_001095_060 Hb_001095_060 Hb_002205_200--Hb_001095_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14403 0 0 0 0 0.153343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223564 0 0 0 0

CAGE analysis