Hb_001722_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1722: 103576-105515
Sequence    

Annotation

kegg
ID rcu:RCOM_0597580
description nucleic acid binding protein, putative
nr
ID XP_012072290.1
description PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q9ZU93
description Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana GN=PUX2 PE=1 SV=2
trembl
ID A0A067L1Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04747 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ubx domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16230: 95487-105043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_070 0.0 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
2 Hb_000024_130 0.1251577779 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000007_440 0.1319639061 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
4 Hb_018212_010 0.1338988715 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000009_150 0.1344331216 - - carbohydrate transporter, putative [Ricinus communis]
6 Hb_000417_410 0.1358961268 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
7 Hb_002571_080 0.1413310714 - - secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]
8 Hb_002361_010 0.1418285916 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_007483_080 0.1435705445 - - hypothetical protein RCOM_0634810 [Ricinus communis]
10 Hb_026698_020 0.1481120682 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_000329_790 0.1525365464 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
12 Hb_000365_220 0.152683324 - - protein phosphatase-1, putative [Ricinus communis]
13 Hb_000731_210 0.1531192096 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005568_050 0.1536096277 - - ascorbate peroxidase [Hevea brasiliensis]
15 Hb_001956_080 0.1575546715 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
16 Hb_001179_010 0.1581813658 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
17 Hb_005999_020 0.1587114726 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
18 Hb_000009_420 0.1595514015 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
19 Hb_000737_010 0.1601402953 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
20 Hb_000760_080 0.160379797 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001722_070 Hb_001722_070 Hb_000024_130 Hb_000024_130 Hb_001722_070--Hb_000024_130 Hb_000007_440 Hb_000007_440 Hb_001722_070--Hb_000007_440 Hb_018212_010 Hb_018212_010 Hb_001722_070--Hb_018212_010 Hb_000009_150 Hb_000009_150 Hb_001722_070--Hb_000009_150 Hb_000417_410 Hb_000417_410 Hb_001722_070--Hb_000417_410 Hb_002571_080 Hb_002571_080 Hb_001722_070--Hb_002571_080 Hb_000731_210 Hb_000731_210 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_042202_020 Hb_042202_020 Hb_000024_130--Hb_042202_020 Hb_003142_060 Hb_003142_060 Hb_000024_130--Hb_003142_060 Hb_007483_080 Hb_007483_080 Hb_000007_440--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170 Hb_002361_010 Hb_002361_010 Hb_018212_010--Hb_002361_010 Hb_018212_010--Hb_007483_080 Hb_018212_010--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_018212_010--Hb_005016_080 Hb_001956_080 Hb_001956_080 Hb_018212_010--Hb_001956_080 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_002888_040 Hb_002888_040 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010 Hb_005999_020 Hb_005999_020 Hb_002571_080--Hb_005999_020 Hb_000694_050 Hb_000694_050 Hb_002571_080--Hb_000694_050 Hb_010174_180 Hb_010174_180 Hb_002571_080--Hb_010174_180 Hb_002871_110 Hb_002871_110 Hb_002571_080--Hb_002871_110 Hb_001160_020 Hb_001160_020 Hb_002571_080--Hb_001160_020 Hb_002571_080--Hb_000007_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0340863 5.47074 6.69261 3.76684 0.0137351 0.510016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.687038 0.368531 0.138479 3.8639 4.93431

CAGE analysis