Hb_001722_100

Information

Type -
Description -
Location Contig1722: 117055-117447
Sequence    

Annotation

kegg
ID rcu:RCOM_0597570
description hypothetical protein
nr
ID XP_002525982.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJ13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0597570 PE=4 SV=1
Gene Ontology
ID GO:0005739
description integral to endoplasmic reticulum

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16233: 116598-117547
cDNA
(Sanger)
(ID:Location)		 018_K16.ab1: 116866-117545 , 021_C24.ab1: 116870-117545 , 051_N19.ab1: 116870-117545 , 053_N21.ab1: 116873-117513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014720_080 0.057652929 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
3 Hb_001235_190 0.0617839771 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_002963_010 0.0622299579 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
5 Hb_007479_020 0.0627529003 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
6 Hb_000834_270 0.0629968501 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
7 Hb_008173_090 0.0648887361 - - glutathione peroxidase, putative [Ricinus communis]
8 Hb_000025_120 0.0709197075 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
9 Hb_000146_020 0.075109957 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_010172_070 0.0751402963 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
11 Hb_004204_120 0.07770684 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
12 Hb_001257_080 0.077761138 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000522_080 0.0790364593 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
14 Hb_000120_750 0.0803918784 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
15 Hb_021650_030 0.0816764457 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_000574_480 0.0822865773 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_001383_060 0.08421721 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_003376_030 0.0850947989 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
19 Hb_000347_410 0.0864979168 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
20 Hb_002030_040 0.0867263744 - - hypothetical protein JCGZ_18677 [Jatropha curcas]

Gene co-expression network

sample Hb_001722_100 Hb_001722_100 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_001235_190--Hb_008173_090 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_007479_020--Hb_008173_090 Hb_000834_270--Hb_000146_020 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.344 108.282 89.903 88.8296 164.944 193.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
450.751 417.07 266.029 145.424 58.0039

CAGE analysis