Hb_001723_030

Information

Type -
Description -
Location Contig1723: 34456-37628
Sequence    

Annotation

kegg
ID rcu:RCOM_1002410
description tex protein-relatedtranscription accessory protein, putative
nr
ID XP_012084142.1
description PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
swissprot
ID P29344
description 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1
trembl
ID A0A067JYU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19053 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16261: 34321-37560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_030 0.0 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
2 Hb_002217_140 0.0796772394 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
3 Hb_000803_240 0.0810148044 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
4 Hb_000309_020 0.0850451481 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
5 Hb_016461_030 0.0885514149 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_002027_410 0.089275915 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
7 Hb_000684_430 0.0947275504 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
8 Hb_000345_370 0.0957082998 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
9 Hb_003777_020 0.0983462111 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
10 Hb_003171_030 0.0998694931 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
11 Hb_009687_020 0.0999691957 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
12 Hb_189003_060 0.1005542132 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000661_090 0.1010251674 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_014361_110 0.1015761371 - - RNA binding protein, putative [Ricinus communis]
15 Hb_001220_050 0.1016567529 - - DNA-damage-inducible protein f, putative [Ricinus communis]
16 Hb_000059_270 0.1025563829 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
17 Hb_000537_070 0.1026618974 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
18 Hb_006198_130 0.1032413122 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
19 Hb_036790_120 0.105491075 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
20 Hb_004055_160 0.1055279067 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001723_030 Hb_001723_030 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_002217_140--Hb_000684_430 Hb_004055_160 Hb_004055_160 Hb_002217_140--Hb_004055_160 Hb_002217_140--Hb_000803_240 Hb_006829_080 Hb_006829_080 Hb_002217_140--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002217_140--Hb_000802_050 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_002542_160 Hb_002542_160 Hb_000309_020--Hb_002542_160 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000220_210 Hb_000220_210 Hb_000309_020--Hb_000220_210 Hb_000345_370 Hb_000345_370 Hb_000309_020--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_002027_410--Hb_016461_030 Hb_006637_080 Hb_006637_080 Hb_002027_410--Hb_006637_080 Hb_002027_410--Hb_003777_020 Hb_002027_410--Hb_000803_240 Hb_002027_410--Hb_000144_060 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_000684_430--Hb_004055_160 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.328 9.11037 47.1271 20.808 15.0698 15.9033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6681 10.9981 11.1973 13.2944 95.5299

CAGE analysis