Hb_001723_060

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoamide dehydrogenase
Location Contig1723: 73456-78933
Sequence    

Annotation

kegg
ID rcu:RCOM_1002450
description dihydrolipoamide dehydrogenase, putative (EC:1.8.1.4)
nr
ID XP_011019266.1
description PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
swissprot
ID Q9M5K3
description Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2
trembl
ID A9PL03
description Dihydrolipoyl dehydrogenase OS=Populus tremuloides GN=LPD1 PE=2 SV=1
Gene Ontology
ID GO:0005623
description dihydrolipoyl dehydrogenase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16262: 73458-76161 , PASA_asmbl_16263: 74765-75208 , PASA_asmbl_16264: 76969-79075
cDNA
(Sanger)
(ID:Location)		 051_I05.ab1: 74530-76094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_060 0.0 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
2 Hb_001195_450 0.0682053234 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
3 Hb_002762_110 0.0822832178 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009778_060 0.0848855147 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
5 Hb_001138_060 0.0864781268 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
6 Hb_001214_050 0.0869576296 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
7 Hb_000482_040 0.0890439185 - - Protein YME1, putative [Ricinus communis]
8 Hb_001478_010 0.0948880874 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
9 Hb_158530_020 0.0981871335 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
10 Hb_000035_350 0.0987884812 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
11 Hb_002078_340 0.0997303645 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
12 Hb_022092_030 0.0999949956 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
13 Hb_000107_430 0.1039249661 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
14 Hb_005511_140 0.1048333932 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
15 Hb_001975_150 0.1065228765 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
16 Hb_001226_140 0.1093472317 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
17 Hb_000635_060 0.1095621316 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
18 Hb_004644_030 0.1099031838 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_000504_180 0.110065976 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_000340_040 0.110995518 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001723_060 Hb_001723_060 Hb_001195_450 Hb_001195_450 Hb_001723_060--Hb_001195_450 Hb_002762_110 Hb_002762_110 Hb_001723_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001723_060--Hb_009778_060 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_000482_040 Hb_000482_040 Hb_001723_060--Hb_000482_040 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_001195_450--Hb_009778_060 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_002762_110--Hb_001214_050 Hb_009778_060--Hb_000482_040 Hb_009778_060--Hb_001214_050 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_001138_060--Hb_002762_110 Hb_001138_060--Hb_009778_060 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_001138_060--Hb_000077_150 Hb_001214_050--Hb_000077_150 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2613 39.8134 44.2417 46.7385 13.4069 16.6504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1294 35.6988 46.2468 44.9107 109.414

CAGE analysis