Hb_001723_070

Information

Type -
Description -
Location Contig1723: 86775-90980
Sequence    

Annotation

kegg
ID rcu:RCOM_1002690
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012084150.1
description PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID A0A067K827
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19059 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16268: 88729-90404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_070 0.0 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
2 Hb_162286_030 0.0731115794 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
3 Hb_009778_050 0.107861537 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
4 Hb_010174_170 0.11280496 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
5 Hb_004079_110 0.1171654237 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
6 Hb_002110_060 0.130220575 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
7 Hb_001621_020 0.1346544391 - - -
8 Hb_001221_480 0.1350716242 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_000009_130 0.1369955581 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
10 Hb_000288_140 0.1390657926 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
11 Hb_111985_160 0.1430287706 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
12 Hb_003050_050 0.1431016631 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
13 Hb_001660_040 0.1435189008 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_002686_390 0.1476792387 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
15 Hb_150730_010 0.1479051424 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_008554_090 0.1490863613 - - zinc finger protein, putative [Ricinus communis]
17 Hb_004129_110 0.1499996873 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
18 Hb_000220_170 0.1504465209 - - -
19 Hb_000227_370 0.1551576625 - - sugar transporter, putative [Ricinus communis]
20 Hb_006711_020 0.1588811471 - - hypothetical protein JCGZ_07258 [Jatropha curcas]

Gene co-expression network

sample Hb_001723_070 Hb_001723_070 Hb_162286_030 Hb_162286_030 Hb_001723_070--Hb_162286_030 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_010174_170 Hb_010174_170 Hb_001723_070--Hb_010174_170 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_002110_060 Hb_002110_060 Hb_001723_070--Hb_002110_060 Hb_001621_020 Hb_001621_020 Hb_001723_070--Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_162286_030--Hb_002110_060 Hb_000009_130 Hb_000009_130 Hb_162286_030--Hb_000009_130 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_150730_010 Hb_150730_010 Hb_009778_050--Hb_150730_010 Hb_009778_050--Hb_004079_110 Hb_002003_030 Hb_002003_030 Hb_009778_050--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_009778_050--Hb_116469_010 Hb_011861_020 Hb_011861_020 Hb_009778_050--Hb_011861_020 Hb_000022_280 Hb_000022_280 Hb_010174_170--Hb_000022_280 Hb_004129_110 Hb_004129_110 Hb_010174_170--Hb_004129_110 Hb_010174_170--Hb_000009_130 Hb_010519_020 Hb_010519_020 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480 Hb_006949_030 Hb_006949_030 Hb_004079_110--Hb_006949_030 Hb_001660_040 Hb_001660_040 Hb_004079_110--Hb_001660_040 Hb_004079_110--Hb_001621_020 Hb_001609_080 Hb_001609_080 Hb_004079_110--Hb_001609_080 Hb_008554_090 Hb_008554_090 Hb_002110_060--Hb_008554_090 Hb_009070_030 Hb_009070_030 Hb_002110_060--Hb_009070_030 Hb_002110_060--Hb_000009_130 Hb_005730_070 Hb_005730_070 Hb_002110_060--Hb_005730_070 Hb_001454_290 Hb_001454_290 Hb_002110_060--Hb_001454_290 Hb_001355_110 Hb_001355_110 Hb_001621_020--Hb_001355_110 Hb_001621_020--Hb_006949_030 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.400794 18.9144 17.066 9.69236 0.376088 0.1808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0373188 0.0391573 0.0187684 44.8412 1.6541

CAGE analysis