Hb_001723_110

Information

Type -
Description -
Location Contig1723: 115492-116031
Sequence    

Annotation

kegg
ID mdm:103452641
description solute carrier family 25 member 44-like
nr
ID XP_008390385.1
description PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
swissprot
ID -
description -
trembl
ID U5G249
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s09950g PE=3 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 25 member 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_110 0.0 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
2 Hb_003647_120 0.1533224179 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
3 Hb_003992_260 0.2007016563 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
4 Hb_001279_230 0.2079579551 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
5 Hb_004846_180 0.2110245064 - - heat shock protein, putative [Ricinus communis]
6 Hb_027255_010 0.2320751863 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
7 Hb_000398_130 0.2331862881 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
8 Hb_003337_070 0.2354799392 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
9 Hb_000205_070 0.2376313477 - - kinase, putative [Ricinus communis]
10 Hb_182807_020 0.2380421209 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_001104_040 0.2474655387 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_184326_010 0.2481103859 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
13 Hb_000853_290 0.2485055508 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
14 Hb_009686_010 0.2534279427 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
15 Hb_025194_030 0.2547978827 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
16 Hb_006745_020 0.2574149962 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
17 Hb_000206_130 0.2771859422 - - unnamed protein product [Vitis vinifera]
18 Hb_002168_020 0.2797257892 - - ATP binding protein, putative [Ricinus communis]
19 Hb_009189_030 0.2823289276 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
20 Hb_007382_020 0.2827121981 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001723_110 Hb_001723_110 Hb_003647_120 Hb_003647_120 Hb_001723_110--Hb_003647_120 Hb_003992_260 Hb_003992_260 Hb_001723_110--Hb_003992_260 Hb_001279_230 Hb_001279_230 Hb_001723_110--Hb_001279_230 Hb_004846_180 Hb_004846_180 Hb_001723_110--Hb_004846_180 Hb_027255_010 Hb_027255_010 Hb_001723_110--Hb_027255_010 Hb_000398_130 Hb_000398_130 Hb_001723_110--Hb_000398_130 Hb_003647_120--Hb_001279_230 Hb_184326_010 Hb_184326_010 Hb_003647_120--Hb_184326_010 Hb_003337_070 Hb_003337_070 Hb_003647_120--Hb_003337_070 Hb_006745_020 Hb_006745_020 Hb_003647_120--Hb_006745_020 Hb_003647_120--Hb_000398_130 Hb_006846_100 Hb_006846_100 Hb_003992_260--Hb_006846_100 Hb_003992_260--Hb_004846_180 Hb_007382_020 Hb_007382_020 Hb_003992_260--Hb_007382_020 Hb_006846_090 Hb_006846_090 Hb_003992_260--Hb_006846_090 Hb_043629_020 Hb_043629_020 Hb_003992_260--Hb_043629_020 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_001279_230--Hb_003337_070 Hb_001279_230--Hb_184326_010 Hb_001279_230--Hb_006745_020 Hb_025194_030 Hb_025194_030 Hb_004846_180--Hb_025194_030 Hb_182807_020 Hb_182807_020 Hb_004846_180--Hb_182807_020 Hb_004846_180--Hb_184326_010 Hb_008749_050 Hb_008749_050 Hb_004846_180--Hb_008749_050 Hb_000853_300 Hb_000853_300 Hb_004846_180--Hb_000853_300 Hb_004846_180--Hb_007382_020 Hb_000205_070 Hb_000205_070 Hb_027255_010--Hb_000205_070 Hb_009686_010 Hb_009686_010 Hb_027255_010--Hb_009686_010 Hb_009189_030 Hb_009189_030 Hb_027255_010--Hb_009189_030 Hb_114868_010 Hb_114868_010 Hb_027255_010--Hb_114868_010 Hb_002326_060 Hb_002326_060 Hb_027255_010--Hb_002326_060 Hb_000853_290 Hb_000853_290 Hb_027255_010--Hb_000853_290 Hb_000398_130--Hb_006745_020 Hb_000488_030 Hb_000488_030 Hb_000398_130--Hb_000488_030 Hb_005730_100 Hb_005730_100 Hb_000398_130--Hb_005730_100 Hb_000398_130--Hb_001279_230 Hb_000398_130--Hb_027255_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.223791 1.1819 0 0 3.44198 1.64056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.159593 0.254617 0 0

CAGE analysis