Hb_001726_020

Information

Type -
Description -
Location Contig1726: 11520-17064
Sequence    

Annotation

kegg
ID rcu:RCOM_1450020
description clathrin binding protein, putative
nr
ID XP_012067184.1
description PREDICTED: endophilin-A1 [Jatropha curcas]
swissprot
ID Q8AXV0
description Endophilin-A2 OS=Gallus gallus GN=SH3GL1 PE=1 SV=1
trembl
ID A0A067LB77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26743 PE=4 SV=1
Gene Ontology
ID GO:0005737
description sh3 domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16311: 11498-17041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_020 0.0 - - PREDICTED: endophilin-A1 [Jatropha curcas]
2 Hb_005539_280 0.0391332554 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
3 Hb_000250_060 0.060082326 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
4 Hb_000504_140 0.071881216 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
5 Hb_005779_060 0.0736968854 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
6 Hb_000783_020 0.0759798481 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
7 Hb_000529_170 0.0765295659 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
8 Hb_002046_180 0.0772280621 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
9 Hb_012325_020 0.0777230875 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
10 Hb_000120_460 0.078397772 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
11 Hb_001633_210 0.0786035591 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
12 Hb_058999_020 0.0792618306 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
13 Hb_000985_030 0.0794766876 - - PREDICTED: RRP15-like protein [Populus euphratica]
14 Hb_001318_270 0.080234047 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
15 Hb_002830_030 0.0810389187 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
16 Hb_003053_020 0.0835453761 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
17 Hb_010422_060 0.0837355921 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
18 Hb_002110_150 0.0844657534 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
19 Hb_000035_180 0.0846815609 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
20 Hb_000086_400 0.0857427649 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001726_020 Hb_001726_020 Hb_005539_280 Hb_005539_280 Hb_001726_020--Hb_005539_280 Hb_000250_060 Hb_000250_060 Hb_001726_020--Hb_000250_060 Hb_000504_140 Hb_000504_140 Hb_001726_020--Hb_000504_140 Hb_005779_060 Hb_005779_060 Hb_001726_020--Hb_005779_060 Hb_000783_020 Hb_000783_020 Hb_001726_020--Hb_000783_020 Hb_000529_170 Hb_000529_170 Hb_001726_020--Hb_000529_170 Hb_005539_280--Hb_000504_140 Hb_005539_280--Hb_000250_060 Hb_058999_020 Hb_058999_020 Hb_005539_280--Hb_058999_020 Hb_001633_050 Hb_001633_050 Hb_005539_280--Hb_001633_050 Hb_005539_280--Hb_005779_060 Hb_001633_210 Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_010812_120 Hb_010812_120 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_000504_140--Hb_005779_060 Hb_000504_140--Hb_001633_050 Hb_000317_240 Hb_000317_240 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_000985_030 Hb_000985_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_001489_080 Hb_001489_080 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_000039_160 Hb_000039_160 Hb_000529_170--Hb_000039_160 Hb_000529_170--Hb_005539_280 Hb_000529_170--Hb_000250_060 Hb_001226_040 Hb_001226_040 Hb_000529_170--Hb_001226_040 Hb_001245_100 Hb_001245_100 Hb_000529_170--Hb_001245_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6458 11.9023 13.6558 10.0965 13.5497 16.9375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9124 24.0096 30.0548 19.5709 12.706

CAGE analysis