Hb_001726_040

Information

Type -
Description -
Location Contig1726: 78973-88427
Sequence    

Annotation

kegg
ID cic:CICLE_v10029230mg
description hypothetical protein
nr
ID XP_006423465.1
description hypothetical protein CICLE_v10029230mg [Citrus clementina]
swissprot
ID P43557
description Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1
trembl
ID V4SD31
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029230mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16312: 78968-88272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_040 0.0 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
2 Hb_000069_700 0.084996918 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
3 Hb_004057_010 0.085291286 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
4 Hb_000087_130 0.0883332679 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
5 Hb_002081_030 0.0925499383 - - unnamed protein product [Coffea canephora]
6 Hb_000189_240 0.0984907506 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
7 Hb_000735_040 0.0993722191 - - 60S ribosomal protein L32A [Hevea brasiliensis]
8 Hb_000450_130 0.1000804814 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
9 Hb_006478_160 0.1003410767 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_179296_010 0.1004672744 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
11 Hb_000356_090 0.103321716 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
12 Hb_026053_020 0.1034954115 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
13 Hb_003633_060 0.1042589043 - - translationally controlled tumor protein [Hevea brasiliensis]
14 Hb_000317_070 0.1055157485 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
15 Hb_174865_010 0.1063660031 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
16 Hb_000567_410 0.1063999554 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
17 Hb_001053_140 0.1069564198 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
18 Hb_011236_010 0.1071213697 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
19 Hb_004223_040 0.1074802511 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
20 Hb_000093_110 0.1076094887 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]

Gene co-expression network

sample Hb_001726_040 Hb_001726_040 Hb_000069_700 Hb_000069_700 Hb_001726_040--Hb_000069_700 Hb_004057_010 Hb_004057_010 Hb_001726_040--Hb_004057_010 Hb_000087_130 Hb_000087_130 Hb_001726_040--Hb_000087_130 Hb_002081_030 Hb_002081_030 Hb_001726_040--Hb_002081_030 Hb_000189_240 Hb_000189_240 Hb_001726_040--Hb_000189_240 Hb_000735_040 Hb_000735_040 Hb_001726_040--Hb_000735_040 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_006198_070 Hb_006198_070 Hb_004057_010--Hb_006198_070 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_002081_030--Hb_000087_130 Hb_002081_030--Hb_000948_220 Hb_000809_060 Hb_000809_060 Hb_002081_030--Hb_000809_060 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_009778_040 Hb_009778_040 Hb_002081_030--Hb_009778_040 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0388 9.88945 22.3419 26.6441 5.8869 14.2046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9049 76.9055 36.2679 11.6291 11.6807

CAGE analysis