Hb_001726_080

Information

Type -
Description -
Location Contig1726: 135971-138873
Sequence    

Annotation

kegg
ID rcu:RCOM_1081160
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012085637.1
description PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9FNX8
description Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1
trembl
ID A0A067JS52
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_17929 PE=3 SV=1
Gene Ontology
ID GO:0005886
description lipoxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16317: 95788-157105 , PASA_asmbl_16324: 97680-147325 , PASA_asmbl_16330: 95963-142836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_080 0.0 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
2 Hb_027472_140 0.1195326459 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646176 [Jatropha curcas]
3 Hb_011344_200 0.1239394474 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
4 Hb_157023_020 0.1416039019 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_001085_040 0.1421250143 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_000365_010 0.1434087867 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
7 Hb_011224_050 0.1467234218 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
8 Hb_011249_070 0.1467521632 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
9 Hb_006153_060 0.1497097409 - - catalytic, putative [Ricinus communis]
10 Hb_023344_150 0.1521722269 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
11 Hb_004607_090 0.1564800099 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
12 Hb_002303_020 0.1578171987 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
13 Hb_001189_040 0.1581232893 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
14 Hb_002272_270 0.159358615 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
15 Hb_000840_200 0.159803592 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
16 Hb_000983_050 0.1616157793 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000731_170 0.1619389024 - - PREDICTED: phospholipase A I [Jatropha curcas]
18 Hb_015675_040 0.1622629997 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
19 Hb_001712_060 0.162593904 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
20 Hb_006970_050 0.1649819862 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001726_080 Hb_001726_080 Hb_027472_140 Hb_027472_140 Hb_001726_080--Hb_027472_140 Hb_011344_200 Hb_011344_200 Hb_001726_080--Hb_011344_200 Hb_157023_020 Hb_157023_020 Hb_001726_080--Hb_157023_020 Hb_001085_040 Hb_001085_040 Hb_001726_080--Hb_001085_040 Hb_000365_010 Hb_000365_010 Hb_001726_080--Hb_000365_010 Hb_011224_050 Hb_011224_050 Hb_001726_080--Hb_011224_050 Hb_027472_140--Hb_157023_020 Hb_000445_470 Hb_000445_470 Hb_027472_140--Hb_000445_470 Hb_004607_090 Hb_004607_090 Hb_027472_140--Hb_004607_090 Hb_000292_100 Hb_000292_100 Hb_027472_140--Hb_000292_100 Hb_000731_170 Hb_000731_170 Hb_027472_140--Hb_000731_170 Hb_002893_040 Hb_002893_040 Hb_027472_140--Hb_002893_040 Hb_004449_180 Hb_004449_180 Hb_011344_200--Hb_004449_180 Hb_011344_200--Hb_157023_020 Hb_000035_160 Hb_000035_160 Hb_011344_200--Hb_000035_160 Hb_011344_200--Hb_027472_140 Hb_002092_120 Hb_002092_120 Hb_011344_200--Hb_002092_120 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_000603_160 Hb_000603_160 Hb_157023_020--Hb_000603_160 Hb_000270_030 Hb_000270_030 Hb_001085_040--Hb_000270_030 Hb_010021_030 Hb_010021_030 Hb_001085_040--Hb_010021_030 Hb_002414_060 Hb_002414_060 Hb_001085_040--Hb_002414_060 Hb_011249_070 Hb_011249_070 Hb_001085_040--Hb_011249_070 Hb_001019_050 Hb_001019_050 Hb_001085_040--Hb_001019_050 Hb_143629_130 Hb_143629_130 Hb_001085_040--Hb_143629_130 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_000365_010--Hb_011224_050 Hb_001951_060 Hb_001951_060 Hb_000365_010--Hb_001951_060 Hb_015675_040 Hb_015675_040 Hb_011224_050--Hb_015675_040 Hb_003878_150 Hb_003878_150 Hb_011224_050--Hb_003878_150 Hb_001195_400 Hb_001195_400 Hb_011224_050--Hb_001195_400 Hb_001975_150 Hb_001975_150 Hb_011224_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_011224_050--Hb_000504_180 Hb_028487_160 Hb_028487_160 Hb_011224_050--Hb_028487_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.565052 2.96553 1.76753 3.74896 0.806082 2.20811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.218 3.73228 0.820165 1.54353 3.44264

CAGE analysis