Hb_001728_020

Information

Type -
Description -
Location Contig1728: 18447-21942
Sequence    

Annotation

kegg
ID rcu:RCOM_1388970
description oxidoreductase, putative (EC:1.1.1.18)
nr
ID XP_012070016.1
description PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
swissprot
ID P49307
description Rhizopine catabolism protein MocA OS=Rhizobium meliloti GN=mocA PE=3 SV=1
trembl
ID A0A067KY30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03419 PE=4 SV=1
Gene Ontology
ID GO:0050112
description trans- -dihydrobenzene- -diol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16381: 18484-22001 , PASA_asmbl_16382: 18742-21939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_020 0.0 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
2 Hb_000529_280 0.107750031 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
3 Hb_006060_020 0.1170075591 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
4 Hb_026198_010 0.1203097615 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
5 Hb_172632_050 0.1229251381 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
6 Hb_000732_190 0.128603719 - - structural molecule, putative [Ricinus communis]
7 Hb_002686_150 0.1293429803 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000645_200 0.1293445956 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_000012_240 0.1327009817 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
10 Hb_000711_010 0.1337218108 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_000120_810 0.1381996444 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_000926_260 0.1387708426 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002042_170 0.1401147728 - - RING/U-box superfamily protein [Theobroma cacao]
14 Hb_000704_030 0.1425798715 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
15 Hb_000979_110 0.1427481289 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
16 Hb_003147_060 0.1433916616 - - syntaxin, plant, putative [Ricinus communis]
17 Hb_006637_030 0.1435227962 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_080362_010 0.1442846317 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
19 Hb_171900_020 0.1450985473 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
20 Hb_004774_020 0.1464906129 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]

Gene co-expression network

sample Hb_001728_020 Hb_001728_020 Hb_000529_280 Hb_000529_280 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_172632_050 Hb_172632_050 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_006060_020--Hb_000723_230 Hb_006643_020 Hb_006643_020 Hb_006060_020--Hb_006643_020 Hb_006637_030 Hb_006637_030 Hb_006060_020--Hb_006637_030 Hb_006060_020--Hb_026198_010 Hb_053709_050 Hb_053709_050 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_172632_050--Hb_006060_020 Hb_172632_050--Hb_006643_020 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_172632_050--Hb_000139_470 Hb_001140_360 Hb_001140_360 Hb_000732_190--Hb_001140_360 Hb_000979_110 Hb_000979_110 Hb_000732_190--Hb_000979_110 Hb_000331_510 Hb_000331_510 Hb_000732_190--Hb_000331_510 Hb_000732_190--Hb_000926_260 Hb_000012_240 Hb_000012_240 Hb_000732_190--Hb_000012_240 Hb_001729_020 Hb_001729_020 Hb_002686_150--Hb_001729_020 Hb_003428_090 Hb_003428_090 Hb_002686_150--Hb_003428_090 Hb_000156_090 Hb_000156_090 Hb_002686_150--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_002686_150--Hb_002965_050 Hb_002686_150--Hb_026198_010 Hb_060094_010 Hb_060094_010 Hb_002686_150--Hb_060094_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23842 27.6983 24.5266 23.201 1.76704 5.18252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0134 19.9817 6.43172 15.724 9.87282

CAGE analysis