Hb_001728_030

Information

Type -
Description -
Location Contig1728: 24199-26827
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15590g
description 60S ribosomal protein L15
nr
ID XP_006369001.1
description 60S ribosomal protein L15 [Populus trichocarpa]
swissprot
ID O82528
description 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1
trembl
ID A9PC51
description Ribosomal protein L15 OS=Populus trichocarpa GN=POPTR_0001s15590g PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16383: 25159-25412 , PASA_asmbl_16384: 24294-26760 , PASA_asmbl_16385: 26453-26692
cDNA
(Sanger)
(ID:Location)		 023_H13r.ab1: 27481-38587

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_030 0.0 - - 60S ribosomal protein L15 [Populus trichocarpa]
2 Hb_000836_470 0.0577223898 - - -
3 Hb_002811_170 0.0707237178 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
4 Hb_002078_140 0.0716838717 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_001016_150 0.083033225 - - Rop1 [Hevea brasiliensis]
6 Hb_000172_320 0.0877920076 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
7 Hb_001989_090 0.0895367634 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_002171_060 0.0910667492 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001341_150 0.0942066018 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_000002_380 0.0944852424 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
11 Hb_014720_040 0.0952861274 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
12 Hb_000136_260 0.095351609 - - 40S ribosomal protein S5A [Hevea brasiliensis]
13 Hb_007747_050 0.0953612841 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
14 Hb_008554_060 0.0960288359 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
15 Hb_003435_020 0.0965649614 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_003894_070 0.0968269673 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
17 Hb_006573_020 0.0973724812 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
18 Hb_124953_020 0.0979630834 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
19 Hb_000160_060 0.0984580267 - - unknown [Populus trichocarpa]
20 Hb_000465_390 0.0985770454 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_030 Hb_001728_030 Hb_000836_470 Hb_000836_470 Hb_001728_030--Hb_000836_470 Hb_002811_170 Hb_002811_170 Hb_001728_030--Hb_002811_170 Hb_002078_140 Hb_002078_140 Hb_001728_030--Hb_002078_140 Hb_001016_150 Hb_001016_150 Hb_001728_030--Hb_001016_150 Hb_000172_320 Hb_000172_320 Hb_001728_030--Hb_000172_320 Hb_001989_090 Hb_001989_090 Hb_001728_030--Hb_001989_090 Hb_000836_470--Hb_002811_170 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_001863_430 Hb_001863_430 Hb_002811_170--Hb_001863_430 Hb_002811_170--Hb_001016_150 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_001341_150 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_000172_320--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_000172_320--Hb_002043_130 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010 Hb_000735_090 Hb_000735_090 Hb_001989_090--Hb_000735_090 Hb_007065_010 Hb_007065_010 Hb_001989_090--Hb_007065_010 Hb_001989_090--Hb_000836_470 Hb_005305_150 Hb_005305_150 Hb_001989_090--Hb_005305_150 Hb_001989_090--Hb_002798_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7614 20.6515 66.5772 65.7803 50.2494 56.7489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5485 148.142 47.0377 61.8109 31.4825

CAGE analysis