Hb_001728_050

Information

Type -
Description -
Location Contig1728: 41636-48877
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07640g
description POPTRDRAFT_757043; hypothetical protein
nr
ID XP_012070021.1
description PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
swissprot
ID Q7Z6E9
description E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1
trembl
ID B9GYD1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s07640g PE=4 SV=2
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase rbbp6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16390: 43749-48921 , PASA_asmbl_16391: 41812-47006
cDNA
(Sanger)
(ID:Location)		 010_M20.ab1: 48276-48921

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_050 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
2 Hb_000803_070 0.0527065714 - - PREDICTED: protein TRAUCO [Jatropha curcas]
3 Hb_004357_020 0.0567840585 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
4 Hb_001751_140 0.0612092655 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
5 Hb_001247_130 0.0708333323 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
6 Hb_003927_040 0.0728273928 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
7 Hb_032264_060 0.075251521 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
8 Hb_111198_010 0.077440286 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_005653_090 0.0777677588 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
10 Hb_000603_280 0.0778793744 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
11 Hb_005000_190 0.0788914096 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
12 Hb_003929_280 0.0790016979 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
13 Hb_002411_030 0.0795945056 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
14 Hb_000070_080 0.0813320316 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
15 Hb_002843_120 0.0821591655 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
16 Hb_001767_140 0.0824389299 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
17 Hb_001946_040 0.0830949144 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000185_070 0.0833378446 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001635_040 0.083539576 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
20 Hb_003633_070 0.0838595745 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_050 Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001728_050--Hb_000803_070 Hb_004357_020 Hb_004357_020 Hb_001728_050--Hb_004357_020 Hb_001751_140 Hb_001751_140 Hb_001728_050--Hb_001751_140 Hb_001247_130 Hb_001247_130 Hb_001728_050--Hb_001247_130 Hb_003927_040 Hb_003927_040 Hb_001728_050--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_001728_050--Hb_032264_060 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_000803_070--Hb_001751_140 Hb_000803_070--Hb_003927_040 Hb_000162_030 Hb_000162_030 Hb_004357_020--Hb_000162_030 Hb_003633_070 Hb_003633_070 Hb_004357_020--Hb_003633_070 Hb_004357_020--Hb_001247_130 Hb_000070_080 Hb_000070_080 Hb_004357_020--Hb_000070_080 Hb_000162_280 Hb_000162_280 Hb_004357_020--Hb_000162_280 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_032208_040 Hb_032208_040 Hb_001247_130--Hb_032208_040 Hb_005137_050 Hb_005137_050 Hb_001247_130--Hb_005137_050 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_000130_240 Hb_000130_240 Hb_001247_130--Hb_000130_240 Hb_003927_040--Hb_003929_280 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_032264_060--Hb_003633_070 Hb_032264_060--Hb_003927_040 Hb_001140_030 Hb_001140_030 Hb_032264_060--Hb_001140_030 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8733 17.6602 14.3351 8.23742 10.5524 13.7218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9293 10.6957 11.6028 9.326 8.11304

CAGE analysis