Hb_001728_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig1728: 79616-82225
Sequence    

Annotation

kegg
ID mdm:103420270
description transcription repressor MYB5-like
nr
ID AIT52258.1
description MYB family protein [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A097HUP9
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_090 0.0 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
2 Hb_002986_150 0.002387657 - - hypothetical protein glysoja_022060 [Glycine soja]
3 Hb_003549_110 0.0079394386 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
4 Hb_004712_120 0.0081315723 - - Pectinesterase U1 precursor, putative [Ricinus communis]
5 Hb_001504_200 0.0104619165 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
6 Hb_004994_270 0.0117479684 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
7 Hb_014549_030 0.0125792182 - - receptor-kinase, putative [Ricinus communis]
8 Hb_000042_410 0.0130991 - - Patatin precursor, putative [Ricinus communis]
9 Hb_171420_010 0.0140064356 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
10 Hb_187418_010 0.0151195444 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
11 Hb_002081_110 0.016544166 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
12 Hb_001031_130 0.0166353764 - - zinc finger protein, putative [Ricinus communis]
13 Hb_020479_010 0.0175683757 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
14 Hb_001948_060 0.0188090059 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
15 Hb_000185_190 0.0206157898 - - hypothetical protein L484_017526 [Morus notabilis]
16 Hb_003266_110 0.0216312193 - - ATP binding protein, putative [Ricinus communis]
17 Hb_015754_010 0.0221474188 - - Galactose oxidase precursor, putative [Ricinus communis]
18 Hb_137288_010 0.0225603541 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
19 Hb_000003_800 0.0235121365 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001322_060 0.0235296956 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001728_090 Hb_001728_090 Hb_002986_150 Hb_002986_150 Hb_001728_090--Hb_002986_150 Hb_003549_110 Hb_003549_110 Hb_001728_090--Hb_003549_110 Hb_004712_120 Hb_004712_120 Hb_001728_090--Hb_004712_120 Hb_001504_200 Hb_001504_200 Hb_001728_090--Hb_001504_200 Hb_004994_270 Hb_004994_270 Hb_001728_090--Hb_004994_270 Hb_014549_030 Hb_014549_030 Hb_001728_090--Hb_014549_030 Hb_002986_150--Hb_004994_270 Hb_002986_150--Hb_014549_030 Hb_002986_150--Hb_003549_110 Hb_002986_150--Hb_004712_120 Hb_000042_410 Hb_000042_410 Hb_002986_150--Hb_000042_410 Hb_003549_110--Hb_004712_120 Hb_003549_110--Hb_001504_200 Hb_187418_010 Hb_187418_010 Hb_003549_110--Hb_187418_010 Hb_020479_010 Hb_020479_010 Hb_003549_110--Hb_020479_010 Hb_004712_120--Hb_001504_200 Hb_004712_120--Hb_187418_010 Hb_004712_120--Hb_020479_010 Hb_001504_200--Hb_187418_010 Hb_001504_200--Hb_020479_010 Hb_001948_060 Hb_001948_060 Hb_001504_200--Hb_001948_060 Hb_004994_270--Hb_014549_030 Hb_004994_270--Hb_000042_410 Hb_171420_010 Hb_171420_010 Hb_004994_270--Hb_171420_010 Hb_002081_110 Hb_002081_110 Hb_004994_270--Hb_002081_110 Hb_001031_130 Hb_001031_130 Hb_004994_270--Hb_001031_130 Hb_000185_190 Hb_000185_190 Hb_004994_270--Hb_000185_190 Hb_014549_030--Hb_000042_410 Hb_014549_030--Hb_171420_010 Hb_014549_030--Hb_002081_110 Hb_014549_030--Hb_001031_130 Hb_014549_030--Hb_000185_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.677502 0.33546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis