Hb_001728_100

Information

Type -
Description -
Location Contig1728: 90700-94699
Sequence    

Annotation

kegg
ID rcu:RCOM_0236300
description hypothetical protein
nr
ID KDP39898.1
description hypothetical protein JCGZ_03429 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03429 PE=4 SV=1
Gene Ontology
ID GO:0050290
description sphingomyelin phosphodiesterase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16393: 92338-93179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_100 0.0 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
2 Hb_156850_030 0.060043766 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
3 Hb_000032_320 0.0604011843 - - protein binding protein, putative [Ricinus communis]
4 Hb_002027_260 0.0724926845 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
5 Hb_000107_500 0.0799462371 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
6 Hb_004204_080 0.0799677776 - - diacylglycerol kinase, theta, putative [Ricinus communis]
7 Hb_000077_070 0.0799763534 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
8 Hb_001541_020 0.0831119256 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
9 Hb_005993_020 0.0833205699 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
10 Hb_000953_010 0.0834574619 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
11 Hb_006400_040 0.0847150802 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
12 Hb_002307_100 0.0849504518 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
13 Hb_007757_110 0.0867918804 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_000062_250 0.0868865206 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
15 Hb_000077_230 0.0881379075 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
16 Hb_175338_030 0.0891966363 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
17 Hb_010175_020 0.0892559415 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001516_100 0.0897028989 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002400_310 0.0902532998 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
20 Hb_001680_010 0.0907258275 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]

Gene co-expression network

sample Hb_001728_100 Hb_001728_100 Hb_156850_030 Hb_156850_030 Hb_001728_100--Hb_156850_030 Hb_000032_320 Hb_000032_320 Hb_001728_100--Hb_000032_320 Hb_002027_260 Hb_002027_260 Hb_001728_100--Hb_002027_260 Hb_000107_500 Hb_000107_500 Hb_001728_100--Hb_000107_500 Hb_004204_080 Hb_004204_080 Hb_001728_100--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_001728_100--Hb_000077_070 Hb_156850_030--Hb_000032_320 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_156850_030--Hb_004204_080 Hb_156850_030--Hb_000077_070 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_000107_500--Hb_001541_020 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005730_030 Hb_005730_030 Hb_004204_080--Hb_005730_030 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_004204_080--Hb_022408_010 Hb_004204_080--Hb_001541_020 Hb_000077_230 Hb_000077_230 Hb_000077_070--Hb_000077_230 Hb_000077_070--Hb_000025_360 Hb_000336_140 Hb_000336_140 Hb_000077_070--Hb_000336_140 Hb_000077_070--Hb_000032_320 Hb_001247_070 Hb_001247_070 Hb_000077_070--Hb_001247_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6079 15.7458 4.18741 8.25587 18.4548 17.408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7211 9.83595 17.1996 7.72041 4.09203

CAGE analysis