Hb_001728_130

Information

Type -
Description -
Location Contig1728: 139396-141979
Sequence    

Annotation

kegg
ID rcu:RCOM_0236080
description alcohol dehydrogenase, putative (EC:1.1.1.284)
nr
ID XP_002534157.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID P14674
description Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1
trembl
ID B9T7D8
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0236080 PE=3 SV=1
Gene Ontology
ID GO:0008270
description alcohol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16396: 139430-141708
cDNA
(Sanger)
(ID:Location)		 017_H05.ab1: 140834-141705 , 019_D24.ab1: 140039-141708

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_130 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000095_070 0.1119694065 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014361_040 0.1147946915 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_135720_010 0.1173187152 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
5 Hb_005545_110 0.120075154 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
6 Hb_164117_010 0.122824917 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
7 Hb_073808_010 0.1250317132 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
8 Hb_002097_080 0.1257094636 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
9 Hb_032260_130 0.1271572429 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
10 Hb_000959_120 0.1285285499 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
11 Hb_078361_010 0.1322998945 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_000325_010 0.1357567303 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_000181_260 0.1362453975 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
14 Hb_139461_010 0.1373794409 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
15 Hb_007027_010 0.1466796631 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
16 Hb_007632_130 0.1468818575 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
17 Hb_152980_020 0.1477830536 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
18 Hb_019026_050 0.1500408897 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004657_080 0.1516951626 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
20 Hb_000483_130 0.152475065 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_130 Hb_001728_130 Hb_000095_070 Hb_000095_070 Hb_001728_130--Hb_000095_070 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_000162_070 Hb_000162_070 Hb_014361_040--Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_014361_040--Hb_026144_040 Hb_007237_080 Hb_007237_080 Hb_014361_040--Hb_007237_080 Hb_002097_080 Hb_002097_080 Hb_014361_040--Hb_002097_080 Hb_000045_080 Hb_000045_080 Hb_014361_040--Hb_000045_080 Hb_007625_030 Hb_007625_030 Hb_135720_010--Hb_007625_030 Hb_029866_080 Hb_029866_080 Hb_135720_010--Hb_029866_080 Hb_032260_130 Hb_032260_130 Hb_135720_010--Hb_032260_130 Hb_000325_010 Hb_000325_010 Hb_135720_010--Hb_000325_010 Hb_139461_010 Hb_139461_010 Hb_135720_010--Hb_139461_010 Hb_152980_020 Hb_152980_020 Hb_005545_110--Hb_152980_020 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_002750_040 Hb_002750_040 Hb_005545_110--Hb_002750_040 Hb_031224_010 Hb_031224_010 Hb_005545_110--Hb_031224_010 Hb_001404_070 Hb_001404_070 Hb_005545_110--Hb_001404_070 Hb_085315_010 Hb_085315_010 Hb_164117_010--Hb_085315_010 Hb_164117_010--Hb_032260_130 Hb_004893_010 Hb_004893_010 Hb_164117_010--Hb_004893_010 Hb_116194_010 Hb_116194_010 Hb_164117_010--Hb_116194_010 Hb_019026_050 Hb_019026_050 Hb_164117_010--Hb_019026_050 Hb_000127_080 Hb_000127_080 Hb_164117_010--Hb_000127_080 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.340344 3.56711 1.73985 9.89648 0.250126 0.0807251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0825038 0.154394 4.61709 4.12455

CAGE analysis