Hb_001729_040

Information

Type -
Description -
Location Contig1729: 65659-66720
Sequence    

Annotation

kegg
ID tcc:TCM_003521
description hypothetical protein
nr
ID KHN15535.1
description hypothetical protein glysoja_049826, partial [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2Q2H5
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_049826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001729_040 0.0 - - hypothetical protein glysoja_049826, partial [Glycine soja]
2 Hb_000318_090 0.0970410857 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
3 Hb_000892_020 0.1358604655 - - unnamed protein product [Vitis vinifera]
4 Hb_185111_010 0.1593120327 - - -
5 Hb_000718_050 0.2096529125 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
6 Hb_000164_060 0.2261060303 - - -
7 Hb_015220_010 0.2289963933 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
8 Hb_000087_090 0.248908985 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
9 Hb_012368_060 0.254126262 - - -
10 Hb_011457_060 0.2542038199 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
11 Hb_001999_110 0.2543964803 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
12 Hb_000635_120 0.2544187329 - - -
13 Hb_035492_010 0.2551232726 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
14 Hb_083103_030 0.2554454487 - - putative retrotransposon protein [Malus domestica]
15 Hb_103832_030 0.256274959 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
16 Hb_172503_010 0.256453674 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
17 Hb_010267_010 0.2601832077 - - -
18 Hb_115472_010 0.2602276877 - - -
19 Hb_010120_010 0.2604297488 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_001369_330 0.2606150532 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001729_040 Hb_001729_040 Hb_000318_090 Hb_000318_090 Hb_001729_040--Hb_000318_090 Hb_000892_020 Hb_000892_020 Hb_001729_040--Hb_000892_020 Hb_185111_010 Hb_185111_010 Hb_001729_040--Hb_185111_010 Hb_000718_050 Hb_000718_050 Hb_001729_040--Hb_000718_050 Hb_000164_060 Hb_000164_060 Hb_001729_040--Hb_000164_060 Hb_015220_010 Hb_015220_010 Hb_001729_040--Hb_015220_010 Hb_000318_090--Hb_185111_010 Hb_000318_090--Hb_000892_020 Hb_000318_090--Hb_000718_050 Hb_007181_030 Hb_007181_030 Hb_000318_090--Hb_007181_030 Hb_000087_090 Hb_000087_090 Hb_000318_090--Hb_000087_090 Hb_000892_020--Hb_000718_050 Hb_000892_020--Hb_185111_010 Hb_112440_010 Hb_112440_010 Hb_000892_020--Hb_112440_010 Hb_000892_020--Hb_015220_010 Hb_185111_010--Hb_000718_050 Hb_185111_010--Hb_112440_010 Hb_185111_010--Hb_007181_030 Hb_000718_050--Hb_112440_010 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_147793_010 Hb_147793_010 Hb_000164_060--Hb_147793_010 Hb_000111_020 Hb_000111_020 Hb_000164_060--Hb_000111_020 Hb_185736_010 Hb_185736_010 Hb_000164_060--Hb_185736_010 Hb_001627_030 Hb_001627_030 Hb_000164_060--Hb_001627_030 Hb_007273_010 Hb_007273_010 Hb_000164_060--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000164_060--Hb_187134_010 Hb_003960_020 Hb_003960_020 Hb_015220_010--Hb_003960_020 Hb_015220_010--Hb_000164_060 Hb_015220_010--Hb_000718_050 Hb_015220_010--Hb_000318_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0160092 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0740032 0 0.0445779 0

CAGE analysis