Hb_001733_030

Information

Type -
Description -
Location Contig1733: 92486-104546
Sequence    

Annotation

kegg
ID tcc:TCM_021962
description Uncharacterized protein isoform 1
nr
ID XP_010654303.1
description PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HLD9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16502: 92590-104498 , PASA_asmbl_16503: 104164-104432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001733_030 0.0 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
2 Hb_133702_030 0.0597853743 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
3 Hb_000365_030 0.0807510244 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_004109_370 0.0847969476 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_004096_190 0.0854500448 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_001454_370 0.087101159 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
7 Hb_006501_010 0.0878670354 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
8 Hb_028872_070 0.0896663929 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
9 Hb_000122_080 0.0905192196 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
10 Hb_086287_010 0.0950032249 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
11 Hb_000603_030 0.0973759548 - - Ribonuclease III, putative [Ricinus communis]
12 Hb_000130_160 0.0987962689 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]
13 Hb_000130_020 0.0997549713 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
14 Hb_016777_040 0.1004809476 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
15 Hb_002596_060 0.100976867 - - conserved hypothetical protein [Ricinus communis]
16 Hb_019840_030 0.101467592 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
17 Hb_007657_020 0.1015916303 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
18 Hb_006618_090 0.102708374 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
19 Hb_008397_010 0.1039229427 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
20 Hb_003436_020 0.1041262154 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001733_030 Hb_001733_030 Hb_133702_030 Hb_133702_030 Hb_001733_030--Hb_133702_030 Hb_000365_030 Hb_000365_030 Hb_001733_030--Hb_000365_030 Hb_004109_370 Hb_004109_370 Hb_001733_030--Hb_004109_370 Hb_004096_190 Hb_004096_190 Hb_001733_030--Hb_004096_190 Hb_001454_370 Hb_001454_370 Hb_001733_030--Hb_001454_370 Hb_006501_010 Hb_006501_010 Hb_001733_030--Hb_006501_010 Hb_000182_040 Hb_000182_040 Hb_133702_030--Hb_000182_040 Hb_133702_030--Hb_001454_370 Hb_000120_280 Hb_000120_280 Hb_133702_030--Hb_000120_280 Hb_007657_020 Hb_007657_020 Hb_133702_030--Hb_007657_020 Hb_000603_030 Hb_000603_030 Hb_133702_030--Hb_000603_030 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_028872_070 Hb_028872_070 Hb_004096_190--Hb_028872_070 Hb_004096_190--Hb_000603_030 Hb_003943_020 Hb_003943_020 Hb_004096_190--Hb_003943_020 Hb_000134_270 Hb_000134_270 Hb_004096_190--Hb_000134_270 Hb_000398_080 Hb_000398_080 Hb_004096_190--Hb_000398_080 Hb_000505_020 Hb_000505_020 Hb_001454_370--Hb_000505_020 Hb_004096_070 Hb_004096_070 Hb_001454_370--Hb_004096_070 Hb_002078_100 Hb_002078_100 Hb_001454_370--Hb_002078_100 Hb_001235_140 Hb_001235_140 Hb_001454_370--Hb_001235_140 Hb_001935_110 Hb_001935_110 Hb_001454_370--Hb_001935_110 Hb_000994_020 Hb_000994_020 Hb_006501_010--Hb_000994_020 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03965 5.07858 7.13484 6.55761 6.84794 6.55345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83498 1.48759 2.40289 10.128 5.14756

CAGE analysis