Hb_001735_040

Information

Type -
Description -
Location Contig1735: 154406-155929
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08160g
description POPTRDRAFT_652940; hypothetical protein
nr
ID XP_011019922.1
description PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
swissprot
ID Q9S9X4
description Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=3 SV=1
trembl
ID B9HBD9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08160g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16511: 154416-154518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001735_040 0.0 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
2 Hb_007537_040 0.0597047686 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
3 Hb_028491_010 0.0597205625 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
4 Hb_000418_130 0.060337363 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
5 Hb_008225_050 0.0634868244 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
6 Hb_004607_110 0.0652396599 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
7 Hb_029991_010 0.0675648259 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
8 Hb_002752_020 0.0681212705 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
9 Hb_004032_400 0.0682514886 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
10 Hb_002121_050 0.0717253898 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
11 Hb_009588_010 0.0725312543 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
12 Hb_008536_020 0.0727596986 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
13 Hb_004338_050 0.0731080568 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
14 Hb_003913_120 0.0735299917 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
15 Hb_000497_050 0.0741573958 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
16 Hb_147028_010 0.075287642 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
17 Hb_002028_020 0.0754759702 - - acyltransferase, putative [Ricinus communis]
18 Hb_001277_130 0.0759146432 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
19 Hb_000369_110 0.076326322 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_033187_010 0.0772113355 - - epoxide hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001735_040 Hb_001735_040 Hb_007537_040 Hb_007537_040 Hb_001735_040--Hb_007537_040 Hb_028491_010 Hb_028491_010 Hb_001735_040--Hb_028491_010 Hb_000418_130 Hb_000418_130 Hb_001735_040--Hb_000418_130 Hb_008225_050 Hb_008225_050 Hb_001735_040--Hb_008225_050 Hb_004607_110 Hb_004607_110 Hb_001735_040--Hb_004607_110 Hb_029991_010 Hb_029991_010 Hb_001735_040--Hb_029991_010 Hb_007537_040--Hb_008225_050 Hb_000369_110 Hb_000369_110 Hb_007537_040--Hb_000369_110 Hb_003025_160 Hb_003025_160 Hb_007537_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_007537_040--Hb_004970_060 Hb_002752_020 Hb_002752_020 Hb_007537_040--Hb_002752_020 Hb_028491_010--Hb_004607_110 Hb_001141_100 Hb_001141_100 Hb_028491_010--Hb_001141_100 Hb_028491_010--Hb_029991_010 Hb_001277_130 Hb_001277_130 Hb_028491_010--Hb_001277_130 Hb_008847_050 Hb_008847_050 Hb_028491_010--Hb_008847_050 Hb_147028_010 Hb_147028_010 Hb_028491_010--Hb_147028_010 Hb_009588_010 Hb_009588_010 Hb_000418_130--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_000418_130--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_000418_130--Hb_000042_280 Hb_004032_400 Hb_004032_400 Hb_000418_130--Hb_004032_400 Hb_001488_230 Hb_001488_230 Hb_000418_130--Hb_001488_230 Hb_000418_130--Hb_002752_020 Hb_000254_130 Hb_000254_130 Hb_008225_050--Hb_000254_130 Hb_008225_050--Hb_003025_160 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_004607_110--Hb_029991_010 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_000803_080 Hb_000803_080 Hb_004607_110--Hb_000803_080 Hb_029991_010--Hb_131466_010 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0825089 1.88585 1.57271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0577649 3.13119

CAGE analysis