Hb_001741_100

Information

Type rubber biosynthesis
Description Gene Name: REF6
Location Contig1741: 123030-125616
Sequence    

Annotation

kegg
ID pop:POPTR_1432s00200g
description hypothetical protein
nr
ID CBI39522.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q6UWP8
description Suprabasin OS=Homo sapiens GN=SBSN PE=1 SV=2
trembl
ID M1CAS8
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024708 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16601: 122959-124412 , PASA_asmbl_16602: 123717-124412 , PASA_asmbl_16603: 122959-123706 , PASA_asmbl_16604: 124413-125547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_100 0.0 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
2 Hb_002217_130 0.1234410793 - - galactinol synthase-1 [Manihot esculenta]
3 Hb_002234_220 0.1537798617 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
4 Hb_001892_160 0.1627279095 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
5 Hb_000200_060 0.1731254461 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
6 Hb_156144_020 0.1782009826 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
7 Hb_000007_310 0.1816543265 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
8 Hb_171554_020 0.1850592235 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
9 Hb_075570_010 0.1888146351 - - -
10 Hb_002124_020 0.1923635933 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
11 Hb_132629_010 0.197538203 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_134732_010 0.1978206692 - - -
13 Hb_000252_090 0.2009326481 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
14 Hb_000580_060 0.2011490176 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
15 Hb_005568_070 0.2012299534 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
16 Hb_003494_260 0.203497323 - - -
17 Hb_000161_100 0.2103924849 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
18 Hb_002326_060 0.2104894115 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
19 Hb_000153_020 0.2154046189 - - conserved hypothetical protein [Ricinus communis]
20 Hb_177627_010 0.2155104218 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_001741_100 Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_001741_100--Hb_002217_130 Hb_002234_220 Hb_002234_220 Hb_001741_100--Hb_002234_220 Hb_001892_160 Hb_001892_160 Hb_001741_100--Hb_001892_160 Hb_000200_060 Hb_000200_060 Hb_001741_100--Hb_000200_060 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_000007_310 Hb_000007_310 Hb_001741_100--Hb_000007_310 Hb_002217_130--Hb_002234_220 Hb_002217_130--Hb_001892_160 Hb_000161_100 Hb_000161_100 Hb_002217_130--Hb_000161_100 Hb_002217_130--Hb_000007_310 Hb_002217_130--Hb_000200_060 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_002234_220--Hb_000200_060 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_000200_060--Hb_002124_020 Hb_000200_060--Hb_000007_310 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
559.862 18.8651 9.02761 59.1974 595.897 550.764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.86427 1.41247 4.42194 0.892083 25.9483

CAGE analysis