Hb_001741_140

Information

Type -
Description -
Location Contig1741: 164033-170377
Sequence    

Annotation

kegg
ID vvi:100245039
description 60S ribosomal protein L7-2
nr
ID XP_012074809.1
description PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
swissprot
ID P60040
description 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=2 SV=1
trembl
ID A0A067KHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08960 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16607: 164429-166572 , PASA_asmbl_16608: 167581-170302
cDNA
(Sanger)
(ID:Location)		 029_L14.ab1: 164385-166588 , 052_M11.ab1: 167889-170296 , 053_A23.ab1: 167871-170302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_140 0.0 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
2 Hb_010128_130 0.0489511729 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
3 Hb_002997_170 0.0609977026 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_143629_010 0.0645174194 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000997_020 0.0662898901 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
6 Hb_000905_190 0.070368422 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
7 Hb_000107_050 0.0715815802 - - 60S ribosomal protein L9, putative [Ricinus communis]
8 Hb_000003_090 0.0749924794 - - -
9 Hb_003453_020 0.0761105308 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
10 Hb_001221_230 0.0770585899 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004204_200 0.0780224609 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
12 Hb_000209_090 0.0797492241 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_000977_130 0.0808943293 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
14 Hb_000322_050 0.0824336522 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_000017_120 0.0856452492 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
16 Hb_150069_020 0.0859831036 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
17 Hb_003746_040 0.086067503 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
18 Hb_000141_060 0.0864739731 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_005527_050 0.0864938145 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
20 Hb_000976_270 0.0873092573 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]

Gene co-expression network

sample Hb_001741_140 Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_000905_190 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_008887_050 Hb_008887_050 Hb_143629_010--Hb_008887_050 Hb_005503_030 Hb_005503_030 Hb_143629_010--Hb_005503_030 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_031939_010 Hb_031939_010 Hb_143629_010--Hb_031939_010 Hb_000997_020--Hb_000905_190 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000997_020--Hb_003453_020 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_000905_190--Hb_005928_060 Hb_000905_190--Hb_003453_020 Hb_000107_050--Hb_000933_180 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000690_080 Hb_000690_080 Hb_000107_050--Hb_000690_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
323.993 49.9099 80.6038 73.9577 310.934 313.067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.412 239.519 135.296 90.0216 45.4247

CAGE analysis