Hb_001747_030

Information

Type -
Description -
Location Contig1747: 51800-53675
Sequence    

Annotation

kegg
ID -
description -
nr
ID KHG06808.1
description hypothetical protein F383_08210 [Gossypium arboreum]
swissprot
ID Q9M376
description Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1
trembl
ID A0A0B0MXM0
description Uncharacterized protein OS=Gossypium arboreum GN=F383_08210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001747_030 0.0 - - hypothetical protein F383_08210 [Gossypium arboreum]
2 Hb_002133_020 0.0879107614 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000125_010 0.1105122256 transcription factor TF Family: mTERF -
4 Hb_000635_070 0.1149480821 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_072922_010 0.1248375696 - - apolipoprotein d, putative [Ricinus communis]
6 Hb_000111_030 0.1258856556 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
7 Hb_002960_130 0.1268925886 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
8 Hb_082006_010 0.1271126614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001699_100 0.1294603104 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
10 Hb_000023_290 0.1295371974 - - steroid binding protein, putative [Ricinus communis]
11 Hb_019181_030 0.1300795199 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
12 Hb_002192_090 0.1313126603 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
13 Hb_000004_010 0.1344589873 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
14 Hb_129672_010 0.1351781883 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
15 Hb_003929_270 0.135349622 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_000172_510 0.1354994194 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
17 Hb_000300_630 0.1361408383 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
18 Hb_000481_050 0.1361603358 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
19 Hb_002562_110 0.1361644947 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
20 Hb_000384_070 0.13714967 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001747_030 Hb_001747_030 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_000384_070 Hb_000384_070 Hb_002133_020--Hb_000384_070 Hb_000258_240 Hb_000258_240 Hb_002133_020--Hb_000258_240 Hb_000359_090 Hb_000359_090 Hb_002133_020--Hb_000359_090 Hb_019181_030 Hb_019181_030 Hb_002133_020--Hb_019181_030 Hb_002781_030 Hb_002781_030 Hb_002133_020--Hb_002781_030 Hb_082006_010 Hb_082006_010 Hb_000125_010--Hb_082006_010 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_003352_040 Hb_003352_040 Hb_000125_010--Hb_003352_040 Hb_002259_160 Hb_002259_160 Hb_000125_010--Hb_002259_160 Hb_001268_050 Hb_001268_050 Hb_000125_010--Hb_001268_050 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_000300_630 Hb_000300_630 Hb_072922_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_072922_010--Hb_001018_110 Hb_002304_040 Hb_002304_040 Hb_072922_010--Hb_002304_040 Hb_005023_010 Hb_005023_010 Hb_072922_010--Hb_005023_010 Hb_004129_140 Hb_004129_140 Hb_072922_010--Hb_004129_140 Hb_000146_040 Hb_000146_040 Hb_072922_010--Hb_000146_040 Hb_002388_010 Hb_002388_010 Hb_000111_030--Hb_002388_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_182713_020 Hb_182713_020 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_002192_090 Hb_002192_090 Hb_000111_030--Hb_002192_090 Hb_002960_130--Hb_019181_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3339 24.4595 30.96 149.34 24.6798 71.4818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.9214 61.8029 35.7822 29.2973 24.2543

CAGE analysis